| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,722,052 – 10,722,153 |
| Length | 101 |
| Max. P | 0.578155 |
| Location | 10,722,052 – 10,722,153 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 87.95 |
| Shannon entropy | 0.22367 |
| G+C content | 0.39574 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -19.91 |
| Energy contribution | -19.92 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10722052 101 - 21146708 UAAAAAUCGCAAUUAUUA-----UAUCCUCCA----UUCGCUUCUGAUUUGCGGAUUCGAGUGAAAAGUAUCUGACAGUUUUCCAUGAUUGCGGAUGGAUGAUUCCGAUG .....((((.(((((((.-----.......((----((((..((((.....))))..)))))).....((((((.(((((......)))))))))))))))))).)))). ( -28.00, z-score = -2.17, R) >droSim1.chr2R 9491407 101 - 19596830 UAAAAAUCGCAAUUAUUA-----UAUCCUCCA----UUCGCUUCUGAUUUGCGGAGUCGAGUGAAAAGUAUCUGACAGUUUUCCAUGAUUGCGGAUGGAUGAUUCCGUUG .......(((((((((..-----.......((----((((.(((((.....))))).))))))....((.....))........)))))))))((((((....)))))). ( -26.40, z-score = -1.67, R) >droSec1.super_1 8244700 101 - 14215200 UAAAAAUCGCAAUUAUUA-----UAUCCUCCA----UUCGCUUCUGAUUUGCGGAGUCGAGUGAAAAGUAUCUGACAGUUUUCCAUGAUUGCGGAUGGAUGAUUCCGAUG .....((((.(((((((.-----.......((----((((.(((((.....))))).)))))).....((((((.(((((......)))))))))))))))))).)))). ( -28.30, z-score = -2.14, R) >droYak2.chr2R 10658955 101 - 21139217 UAAAAAUCGCAAUUAUUA-----UAUCCACCA----UUCGCUUCUGAUUUGCGGAGUCGGUUGAAAAGUAUCUGACAGUUUUCCAUGAUUGCGGAUGGAUGAUUCCGAUG .....((((.(((((((.-----..((.(((.----(((((.........)))))...))).))....((((((.(((((......)))))))))))))))))).)))). ( -26.20, z-score = -1.40, R) >droEre2.scaffold_4845 7466816 101 + 22589142 UAAAAACCGCAAUUAUUA-----UAUCCUUCA----UUCGCUUCUGAUUUGCGGAGUCGAGUGAAAAGUAUCUGACAGUUUGCCAUGAUUGCGGAUGGAUGAUUCCGAUG ......((((((((((..-----((..(((((----((((.(((((.....))))).))))))))..((.....)).)..))..)))))))))).((((....))))... ( -29.70, z-score = -2.64, R) >droAna3.scaffold_13266 8973195 104 - 19884421 UAAAAAUCUCAAUUAUUACUUGCCAACCUCCAUUGGUUUGUCUUUGAUUUGUGGAGUCGAGUGGAAAGUGUCUGACAGUCU----UGAUUGCAGAUGGAU--UUCCGGAA ......(((........(((((.....((((((..(((.......)))..)))))).)))))(((((.((((((.((((..----..))))))))))..)--))))))). ( -25.70, z-score = -0.80, R) >consensus UAAAAAUCGCAAUUAUUA_____UAUCCUCCA____UUCGCUUCUGAUUUGCGGAGUCGAGUGAAAAGUAUCUGACAGUUUUCCAUGAUUGCGGAUGGAUGAUUCCGAUG .....((((.(((((((....................(((.(((((.....))))).)))........((((((.(((((......)))))))))))))))))).)))). (-19.91 = -19.92 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:27 2011