| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,720,637 – 10,720,731 |
| Length | 94 |
| Max. P | 0.812249 |
| Location | 10,720,637 – 10,720,731 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 63.28 |
| Shannon entropy | 0.68789 |
| G+C content | 0.47500 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -9.69 |
| Energy contribution | -10.83 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10720637 94 + 21146708 UCUGACAUAGUUUAAUUCAUUUGAUUUAACUCCAUUUAGCUCUUCUGCUUCUGCUUGGGUGCACUGACCUGGGCAUCCCUCGCCAUCGAAGAGU--- ........((((.((((.....)))).)))).......(((((((.((...((((..(((......)))..))))......))....)))))))--- ( -20.50, z-score = -0.28, R) >droSim1.chr2R 9490002 93 + 19596830 UCUGACAUAUUUUAAUAUAUUUAAUUGAAAUCC-UUCAGCUCUUCGGCUUCUGCCUGGUUGCACUGACCUGGGCAUGCCUCGCCAUCGAAGAGU--- .((((...((((((((.......))))))))..-.))))(((((((((...(((((((((.....)))).))))).)))..(....))))))).--- ( -26.40, z-score = -2.56, R) >droYak2.chr2R 10657558 89 + 21139217 ACUAACAUAUUUUAAUGUCUUGAAUUG-----CUUUCAGCUCUUCUGCUUCUGCCUGGGAGCACUGACCUGGGCAUCCCUGGCCAUCGAGGAGU--- ....((((......))))..((((...-----..))))((((((((((((((....))))))).((.((.(((...))).)).))..)))))))--- ( -24.00, z-score = -0.50, R) >droEre2.scaffold_4845 7465418 86 - 22589142 GCUAACAAGUUUUAAUGU---GAAUCG-----CUUUUAGCUCUUCUGUUUCUGCCUGGGAGCACUGACCUGGGCCUCCCUGGCCAUCGAGGAGU--- (((((.((((........---.....)-----))))))))(((((.((....(((.(((((..((.....))..))))).))).)).)))))..--- ( -23.42, z-score = 0.11, R) >droAna3.scaffold_13266 8971808 95 + 19884421 ACUGAUUCCUUCUCAUAUUUUUAAACAA--UCAAACCAGCUAUCAUGCUUCUACCUGUGCGUCCUACUAAGCGUAUCCCAGGCCAUCGAGGAAUCAU ..(((((((((.................--.......(((......)))....(((((((((........)))))...)))).....))))))))). ( -20.80, z-score = -3.16, R) >droPer1.super_2 5137838 86 + 9036312 -----UCCACUAUCUUAUCGUUUGCCU---UUCUUCCAGCUCAUCUGCCUGGGUCUGGGAGUCCUUGGCUGCCUCUCGCUGCCCAUUGAGAAGC--- -----..................(((.---..(((((((((((......)))).))))))).....))).((.(((((........))))).))--- ( -23.80, z-score = -0.60, R) >consensus ACUGACAUAUUUUAAUAUAUUUAAUCG___UCCUUUCAGCUCUUCUGCUUCUGCCUGGGAGCACUGACCUGGGCAUCCCUGGCCAUCGAGGAGU___ ......................................(((((((.(((..((((((((........)))))))).....)))....)))))))... ( -9.69 = -10.83 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:26 2011