| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,884,196 – 2,884,342 |
| Length | 146 |
| Max. P | 0.663162 |
| Location | 2,884,196 – 2,884,342 |
|---|---|
| Length | 146 |
| Sequences | 4 |
| Columns | 147 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Shannon entropy | 0.36656 |
| G+C content | 0.40914 |
| Mean single sequence MFE | -30.52 |
| Consensus MFE | -18.14 |
| Energy contribution | -18.20 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2884196 146 - 23011544 UGCCUGGCUGCUAACGUGGCCUUAACCCUCGUGUACCUACGUGUACUCGGUACUACAAUAUAUACUAGAUACUUUUGUAUCUAACUCGAUAUUUGUUGUUUUCACAACAUCUGUGUCUAAACUUAUCAGCAUU-UUCUAGAUAGCAC ((((.(((..(....)..))).........(.((((......)))).))))).............(((((((....)))))))....(((((.((((((....))))))...))))).....(((((((....-..)).)))))... ( -34.40, z-score = -2.37, R) >droSim1.chr2L 2844903 141 - 22036055 UGCCUGGCUGCUAACGUGGCCUUAACCCUCGUUUAUCUACGUGUACUCGGUAC-----UAUAUACUAGAUACUUUUGUAUCCAACCAGAUAUUUGUUGUUUUCACGACAUCUGUGGCUAAACUUAUCAGCAUU-UUCAAGAUAGCGC (((..(((..(....)..))).........(((((.(((((..(((..(((((-----((.....))).))))...)))..)....(((....((((((....))))))))))))).)))))......)))..-............. ( -30.10, z-score = -0.54, R) >droSec1.super_5 1043035 130 - 5866729 UGCCUGGCUGCUAACGUGGCCUUAACCCUCGUUUAUCUACGUGUACUCGGUAC-----UAUAUACUAGAUACUUUUGUAUCCAACUAGAUAUUUGUUGUUUUCACGACAUC-----------UUAUCAGCAUU-UUCAAGAUAGCGC .....(((..(....)..)))........((((.((((..(..(((..(((((-----((.....))).))))...)))..).....((((..((((((....))))))..-----------.))))......-....)))))))). ( -29.00, z-score = -1.56, R) >droEre2.scaffold_4929 2931364 115 - 26641161 UGUCUGGUUGCUAACGUGGCCUUAACCCUCGUG----UACGUGUACCGAGUAC-----UCAAUCUUAGAUACUUUUGUAUC--------UAUCUAUC--UUUCCCGGCUUC----------CUUGGCUAUAUCGUUCAAGAUAC--- ((..((((.(((((.(.((((......((((.(----((....)))))))...-----.......(((((((....)))))--------))......--......)))).)----------.)))))...))))..))......--- ( -28.60, z-score = -2.58, R) >consensus UGCCUGGCUGCUAACGUGGCCUUAACCCUCGUGUAUCUACGUGUACUCGGUAC_____UAUAUACUAGAUACUUUUGUAUCCAACUAGAUAUUUGUUGUUUUCACGACAUC__________CUUAUCAGCAUU_UUCAAGAUAGCGC ((((.(((..(....)..)))......(.(((......))).).....))))...............(((((....)))))............(((((......)))))...................................... (-18.14 = -18.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:28 2011