| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,685,132 – 10,685,242 |
| Length | 110 |
| Max. P | 0.533445 |
| Location | 10,685,132 – 10,685,242 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 91.18 |
| Shannon entropy | 0.16005 |
| G+C content | 0.49183 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -28.62 |
| Energy contribution | -29.02 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10685132 110 - 21146708 GCAGACACAAAACCUCUAAGAAAUAUCGCCUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUU ................((((.....((((((.((...(((.((((......)))))))((((((.....)))))).......)))))))).))))..((....))..... ( -30.20, z-score = -0.83, R) >droSim1.chr2R 9454568 110 - 19596830 GCAGCCACAAAGCCUAUAAGAAAUGUCGUUUAUGAUGUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUU .........((((((((.....(((((......((((.(((.(((.....))))))))))((((.....)))))))))........))))))))...((....))..... ( -37.32, z-score = -1.76, R) >droSec1.super_1 8203172 110 - 14215200 GCAGCCACAAAGCCUGUAAGAAAUGUCGCUUAUAAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUUGGCUUAACGGGAAACCCCCUU ..(((((....((((.......(((((.........((((.((((......)))))))).((((.....)))))))))......)))))))))....((....))..... ( -33.72, z-score = -1.25, R) >droYak2.chr2R 10621295 109 - 21139217 GCAGCCACUAAGCCCAUAGGAAAUGUCGCUUAUGAUAUGGCGCCCAACG-AGGGCCCAUCAACAUUUACUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAAGCCCCUU ((..((..(((((((((......(((..(..(((...(((.((((....-.)))))))((((((.....))))))))))..)))..)))))))))...))...))..... ( -36.20, z-score = -1.88, R) >droEre2.scaffold_4845 7429666 110 + 22589142 GCAGCCACAAAGCCCAUAAGAAAUGUCGCUUACUAUAUGGCGCCCAACGAGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCACUU .........((((((((......(((..(........(((.((((......)))))))((((((.....))))))...)..)))..))))))))...((....))..... ( -35.80, z-score = -1.97, R) >consensus GCAGCCACAAAGCCUAUAAGAAAUGUCGCUUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUU .........((((((((.....(((((.........((((.((((......)))))))).((((.....)))))))))........))))))))...(((.....))).. (-28.62 = -29.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:23 2011