| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,684,459 – 10,684,549 |
| Length | 90 |
| Max. P | 0.531976 |
| Location | 10,684,459 – 10,684,549 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 88.92 |
| Shannon entropy | 0.24243 |
| G+C content | 0.51168 |
| Mean single sequence MFE | -26.57 |
| Consensus MFE | -22.93 |
| Energy contribution | -23.09 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10684459 90 - 21146708 --UUGGCCCUUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACGGAAAG --.......(((((((..(((((((((........(((((((((((((...)))))))).)))))....)))))).)))..))))))).... ( -27.80, z-score = -1.47, R) >droSim1.chr2R 9453904 90 - 19596830 --UUGGCCCUUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACGGAAAG --.......(((((((..(((((((((........(((((((((((((...)))))))).)))))....)))))).)))..))))))).... ( -27.80, z-score = -1.47, R) >droSec1.super_1 8202510 90 - 14215200 --UUGGCCCUUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACGGAAAG --.......(((((((..(((((((((........(((((((((((((...)))))))).)))))....)))))).)))..))))))).... ( -27.80, z-score = -1.47, R) >droYak2.chr2R 10620622 90 - 21139217 --UUGGUCCUUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACGGAAAG --....(((..(((((..(((((((((........(((((((((((((...)))))))).)))))....)))))).)))..))))))))... ( -28.90, z-score = -2.01, R) >droEre2.scaffold_4845 7429001 90 + 22589142 --UUGGUCCUUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACGGAAAG --....(((..(((((..(((((((((........(((((((((((((...)))))))).)))))....)))))).)))..))))))))... ( -28.90, z-score = -2.01, R) >droWil1.scaffold_181141 910625 92 + 5303230 UGGGAGUUUUUGUUUGUUUAGUUGUGUCUGAGAUGUUUCUAGCGUGAGAUGUUCACGCCGAGAAGAAGUGCGCGUGUGGCCGAAAUCGAAAG .......(((((....((..((..((..((.....(((((.(((((((...)))))))..))))).....))..))..))..))..))))). ( -19.50, z-score = 0.61, R) >droAna3.scaffold_13266 8933336 90 - 19884421 --UUGGGCCGUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACCGAAAU --((((((((..(((.(((((..(((((...)))))..))((((((((...))))))))..))).)))..))......))))))........ ( -28.90, z-score = -1.75, R) >droPer1.super_2 5096540 83 - 9036312 --CUGGCCC-UGUUUGUUCAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAAU------ --..(((.(-((......)))((((((........(((((((((((((...)))))))).)))))....))))))...))).....------ ( -26.20, z-score = -1.53, R) >dp4.chr3 4904157 83 - 19779522 --UUGGCCC-UGUUUGUUCAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAAU------ --..(((.(-((......)))((((((........(((((((((((((...)))))))).)))))....))))))...))).....------ ( -26.20, z-score = -1.66, R) >droVir3.scaffold_12875 7923189 88 + 20611582 ----GCGGCGCGUUUGUUUAGUUGCGUCUGAGAUGUUUUUUGCGUGAGAUGUUCGCGCCCAGAAGAAGUGCGCGCGUGGCCGAAACCGAAAC ----((.((((((...(((((......)))))...(((((((((((((...)))))))..)))))).....)))))).))............ ( -23.70, z-score = 1.68, R) >consensus __UUGGCCCUUGUUUGUUUAGUUGCGUUUGAGAUGUUUCUGGCGUGAGAUGUUCGCGCCGAGAAGAAGUGCGCGAGUUGCCCAAACGGAAAG ...........(((((..(((((((((........(((((((((((((...)))))))).)))))....)))))).)))..)))))...... (-22.93 = -23.09 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:22 2011