| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,668,215 – 10,668,265 |
| Length | 50 |
| Max. P | 0.746869 |
| Location | 10,668,215 – 10,668,265 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 95.33 |
| Shannon entropy | 0.07868 |
| G+C content | 0.39000 |
| Mean single sequence MFE | -9.97 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.68 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10668215 50 + 21146708 AUAACCUCAGGGAAUGGAUGCGGCUAUUUAAAGGGUUAACAAAGUCAUCA .((((((....((((((......))))))...))))))............ ( -9.70, z-score = -1.11, R) >droSim1.chr2R 9437387 50 + 19596830 UUAACCUCAGGGAAUGGAUGCGGCUAUUUAAAGGGUUAACAAAGUCAUCA (((((((....((((((......))))))...)))))))........... ( -10.00, z-score = -1.28, R) >droSec1.super_1 8186363 50 + 14215200 UUAACCUCAGGGAAUGGAUCCGCCUAUUUAAAGGGUUAACAAAGUCAUCA (((((((....((((((......))))))...)))))))........... ( -10.20, z-score = -0.82, R) >droYak2.chr2R 10603998 50 + 21139217 UUAACCUCAGGGAAUGGAUUCGGCUAUUUAAAGGGUUAACAAAGUUAUCA (((((((....((((((......))))))...)))))))........... ( -10.00, z-score = -1.62, R) >consensus UUAACCUCAGGGAAUGGAUGCGGCUAUUUAAAGGGUUAACAAAGUCAUCA .((((((....((((((......))))))...))))))............ ( -9.68 = -9.68 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:19 2011