| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,652,570 – 10,652,661 |
| Length | 91 |
| Max. P | 0.884246 |
| Location | 10,652,570 – 10,652,661 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 62.32 |
| Shannon entropy | 0.66223 |
| G+C content | 0.47076 |
| Mean single sequence MFE | -30.34 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.20 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10652570 91 + 21146708 ------AUGUGUAUGUG--UGUGUGUGUGCUUAAGGGGAGGGGUUUAGGUGCAUGUGUGUGCACCGGUGUGCGUGUCAUAUGUACACAUGCUUGUCCUA ------..(..((..(.--...)..))..).....((((.((((...(((((((....))))))).(((((((((...)))))))))..)))).)))). ( -32.80, z-score = -1.66, R) >droSec1.super_1 8170511 93 + 14215200 ------AUGUGAAUGUGCGUGUGUGUGUGCUUAAGGGGAGGGGUUUGCGUGCAUGUGUGUGCACCGGUGUGCGUGUCAUAUGUACACAUGCUUGUCCUA ------........(..((......))..).....((((.((((.((.((((((((((..((((....))))..).))))))))).)).)))).)))). ( -32.90, z-score = -0.92, R) >droYak2.chr2R 10586726 99 + 21139217 GUGUAUAUGGGUAUGCGUAUGUGUGCGUGCUUAAAGGGAGGGGUUUACGUGCAUGUGAGUGCACCGGUGUGCGUGUUAUAUGUACACAUGCUUGUCCUA .......((((((((((......))))))))))..((((.((((....((((((....))))))..(((((((((...)))))))))..)))).)))). ( -36.10, z-score = -1.45, R) >droPer1.super_2 5522019 77 + 9036312 ---------UGAGUGUU--UGUGUGUGUGUUC----------GUAUUCGUGUCUGUGCGCGCGUUGAUGUGU-CGCCAUGCAUACACAUACUUGUCCUA ---------.((((((.--((((((((((..(----------(....((..((..((....))..))..)).-)).)))))))))).))))))...... ( -23.00, z-score = -0.97, R) >droGri2.scaffold_15245 7623983 90 + 18325388 --------AUGUAUACAUACAUAUAAGUGCAUGUACAUAAGUGCUAAUGUGUGCGUCUGUGUGUGAGUGUGUGUAUU-UUUGAGCACAUGCACGUUUCA --------((((...((((((((...(..(((((((....))))....)))..)...)))))))).((((((((...-.....)))))))))))).... ( -26.90, z-score = -0.08, R) >consensus ______AUGUGUAUGUG__UGUGUGUGUGCUUAAAGGGAGGGGUUUACGUGCAUGUGUGUGCACCGGUGUGCGUGUCAUAUGUACACAUGCUUGUCCUA ...................................((((.((((....((((((((((((((((....))))))).)))))))))....)))).)))). (-15.32 = -15.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:17 2011