| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,627,984 – 10,628,034 |
| Length | 50 |
| Max. P | 0.865125 |
| Location | 10,627,984 – 10,628,034 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 92.93 |
| Shannon entropy | 0.14107 |
| G+C content | 0.51000 |
| Mean single sequence MFE | -11.43 |
| Consensus MFE | -9.57 |
| Energy contribution | -9.90 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10627984 50 + 21146708 GUCAUAAUCAACUGCGGCUAAACGAAGCAGCUCCCACUGCUUCCCGAUGU ..............(((......(((((((......)))))))))).... ( -11.30, z-score = -1.69, R) >droAna3.scaffold_13266 5107016 50 - 19884421 UUCAUAAUCAGCUGCGGCUAAACGAAACAGCGUUUGCUGCUUCCCCAUGU .............(((((.(((((......)))))))))).......... ( -12.10, z-score = -1.39, R) >droEre2.scaffold_4845 7369723 50 - 22589142 GUCAUAAUCAACUGCGGCUAAACGAAGCAGCUACCACUGCUUCCCGAUGU ..............(((......(((((((......)))))))))).... ( -11.30, z-score = -1.63, R) >droYak2.chr2R 10562128 50 + 21139217 GUCAUAAUCAACUGCGGCUAAACGAAGCAGCUCCCACUGCUUCCCGAUGU ..............(((......(((((((......)))))))))).... ( -11.30, z-score = -1.69, R) >droSec1.super_1 8147988 50 + 14215200 GUCAUAAUCAACUGCGGCUAAACGAAGCAGCUCCCACUGCUUCCCGAUGU ..............(((......(((((((......)))))))))).... ( -11.30, z-score = -1.69, R) >droSim1.chr2R 9393162 50 + 19596830 GUCAUAAUCAACUGCGGCUAAACGAAGCAGCACCCACUGCUUCCCGAUGU ..............(((......(((((((......)))))))))).... ( -11.30, z-score = -1.64, R) >consensus GUCAUAAUCAACUGCGGCUAAACGAAGCAGCUCCCACUGCUUCCCGAUGU ..............(((......(((((((......)))))))))).... ( -9.57 = -9.90 + 0.33)
| Location | 10,627,984 – 10,628,034 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 92.93 |
| Shannon entropy | 0.14107 |
| G+C content | 0.51000 |
| Mean single sequence MFE | -14.22 |
| Consensus MFE | -14.27 |
| Energy contribution | -13.85 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.12 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10627984 50 - 21146708 ACAUCGGGAAGCAGUGGGAGCUGCUUCGUUUAGCCGCAGUUGAUUAUGAC ...(((.((((((((....))))))))..(((((....)))))...))). ( -13.60, z-score = -0.90, R) >droAna3.scaffold_13266 5107016 50 + 19884421 ACAUGGGGAAGCAGCAAACGCUGUUUCGUUUAGCCGCAGCUGAUUAUGAA .(((((.((((((((....))))))))..(((((....)))))))))).. ( -17.40, z-score = -2.43, R) >droEre2.scaffold_4845 7369723 50 + 22589142 ACAUCGGGAAGCAGUGGUAGCUGCUUCGUUUAGCCGCAGUUGAUUAUGAC ...(((.((((((((....))))))))..(((((....)))))...))). ( -13.60, z-score = -0.97, R) >droYak2.chr2R 10562128 50 - 21139217 ACAUCGGGAAGCAGUGGGAGCUGCUUCGUUUAGCCGCAGUUGAUUAUGAC ...(((.((((((((....))))))))..(((((....)))))...))). ( -13.60, z-score = -0.90, R) >droSec1.super_1 8147988 50 - 14215200 ACAUCGGGAAGCAGUGGGAGCUGCUUCGUUUAGCCGCAGUUGAUUAUGAC ...(((.((((((((....))))))))..(((((....)))))...))). ( -13.60, z-score = -0.90, R) >droSim1.chr2R 9393162 50 - 19596830 ACAUCGGGAAGCAGUGGGUGCUGCUUCGUUUAGCCGCAGUUGAUUAUGAC ...(((.((((((((....))))))))..(((((....)))))...))). ( -13.50, z-score = -0.65, R) >consensus ACAUCGGGAAGCAGUGGGAGCUGCUUCGUUUAGCCGCAGUUGAUUAUGAC .(((...((((((((....))))))))..(((((....)))))..))).. (-14.27 = -13.85 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:16 2011