| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,625,820 – 10,625,912 |
| Length | 92 |
| Max. P | 0.616974 |
| Location | 10,625,820 – 10,625,912 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 53.69 |
| Shannon entropy | 0.87259 |
| G+C content | 0.42435 |
| Mean single sequence MFE | -27.99 |
| Consensus MFE | -1.82 |
| Energy contribution | -1.11 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 2.10 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.07 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10625820 92 + 21146708 ---------UAUUAUUUCAGCUUA----CUUAUAGGCAUU--AAGCUAUUAAAGUA-GUUCUCGUACGUCCUGUUGGACGUACAG-UCCAAUUAGGACGUCGAGCUAUA------ ---------..........(((((----....)))))...--.((((((....)))-)))((((.((((((((((((((.....)-))))).)))))))))))).....------ ( -33.30, z-score = -5.39, R) >droSim1.chr2R 9391004 90 + 19596830 ---------UAUUAUACCAGCGUA----CUUAUAGGAUUU--AAGCUAUUAAAGUA-GUUCUCGUUCGUCCUGUUGGAUGUACAG-UCCAAUUAGGACGUCGAGCUA-------- ---------.........(((.((----(((((((.....--...))))..)))))-....(((..(((((((((((((.....)-))))).))))))).)))))).-------- ( -27.10, z-score = -3.16, R) >droSec1.super_1 8145814 90 + 14215200 ---------UAUUAUACCAGCGUA----CUUAUAGGAUUU--AAGCUAUUAAAGUA-GUUCUCGUUCGUCCUGUUGGAUGUACAG-UCCAAUUAGGACGUCGAGCUA-------- ---------.........(((.((----(((((((.....--...))))..)))))-....(((..(((((((((((((.....)-))))).))))))).)))))).-------- ( -27.10, z-score = -3.16, R) >droYak2.chr2R 10559685 94 + 21139217 ---------UUUUAUUCCAGCUUAUAAGCCUAAAGGCUUC--AAGCUACUAAAGUA-GUUCUCGUACGCCCUGUUGGAUGUACAG-UCCAAUUUGGACGUCGAGCUA-------- ---------.........(((((..(((((....))))).--))))).......((-((((..(((((.((....)).))))).(-(((.....))))...))))))-------- ( -30.30, z-score = -3.66, R) >droEre2.scaffold_4845 7367514 92 - 22589142 ---------UAUUAAUUCAGCUCA----CUUGGAGGCUUUUUAAGCUAUUAAAGUA-GUUCUCGUAGGACCUGUUGGAUGUACAG-UCCUAUUGGGACGUCGAGCUA-------- ---------.........((((((----(((...((((.....))))....)))).-(((((.(((((((.(((.......))))-)))))).)))))...))))).-------- ( -30.40, z-score = -3.00, R) >droAna3.scaffold_13266 5105047 87 - 19884421 ------------UAUUUAAGCUGC----UUUAGUUUAUUUCUUAA--AUUCAGCUU-UUUCUCGUAUGUCCUGUUGGAUGGACAG-UCCUAUUGGGACGUCGGGUUG-------- ------------.....((((((.----...((((((.....)))--)))))))))-...((((.((((((((..((((.....)-)))...))))))))))))...-------- ( -25.40, z-score = -3.50, R) >dp4.chr3 5291077 109 + 19779522 CCUUGAGUCCAGAACAUCUACUGGC--UUUCAGUAGCUUAUCCAAUCAAUCGAUUG-CCUUUUGAACUGCCAGUUGUU-GGACGG-UGCGUGGGUGGCCUUGGGGUAUUG-CCUG ......(((((..(((...((((((--.(((((.((......(((((....)))))-.)).)))))..))))))))))-))))..-.....((((.(((....)))...)-))). ( -30.60, z-score = 0.20, R) >droPer1.super_2 5496332 111 + 9036312 -CUUGAGUCCAGAACAUCUACUGGC--UUUCAGUAGCUUAUCCAAUCAAUCGAUUGGCUUUUUGAAAUGCCAGUUGUUUGGACGG-UGCGUGGGUGGCCUUGGGGUAUUGGCCUG -.....(((((((.((...((((((--((((((.((((.(((.........))).))))..)))))).)))))))))))))))..-.........((((..........)))).. ( -36.30, z-score = -1.41, R) >droWil1.scaffold_180699 1351165 84 + 2593675 -------------------------CAAUUUAUUAGCACACACACACACACAAACAAGUUCACAUGCAUUUUGCAGGGCCAAGAGAUCAGAAAGUGGGGGCGGGUAAUA------ -------------------------....((((..((...(((..............(..(...(((.....))).)..)..(....).....)))...))..))))..------ ( -11.40, z-score = 0.21, R) >consensus _________UAUUAUAUCAGCUUA____CUUAGAGGCUUU__AAGCUAUUAAAGUA_GUUCUCGUACGUCCUGUUGGAUGUACAG_UCCAAUUGGGACGUCGAGCUA________ .........................................................((((.......(((....)))........(((.....)))....)))).......... ( -1.82 = -1.11 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:14 2011