| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,618,215 – 10,618,341 |
| Length | 126 |
| Max. P | 0.685263 |
| Location | 10,618,215 – 10,618,310 |
|---|---|
| Length | 95 |
| Sequences | 9 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.02 |
| Shannon entropy | 0.40116 |
| G+C content | 0.45371 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -12.84 |
| Energy contribution | -12.64 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10618215 95 + 21146708 -------------------GUGUCCUGUUUGCGUUAUUUAUGCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCC-AGACUUAUCCUUUGACUCACGCGGACGCCUUGC-- -------------------((((((.((.((.((((....((.((((((((.((((......))))))))))))))((...-.)).........)))).)).)))))))).....-- ( -27.50, z-score = -2.33, R) >droSim1.chr2R 9383524 95 + 19596830 -------------------GUGUCCUGUUUGCGUUAUUUAUGCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCC-AGACUUAUCCUUUGACUCACGCGGACGCCUUGC-- -------------------((((((.((.((.((((....((.((((((((.((((......))))))))))))))((...-.)).........)))).)).)))))))).....-- ( -27.50, z-score = -2.33, R) >droSec1.super_1 8138304 95 + 14215200 -------------------GUGUCCUGUUUGCGUUAUUUAUGCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCC-AGACUUAUCCUUUGACUCACGCGGACGCCUUGC-- -------------------((((((.((.((.((((....((.((((((((.((((......))))))))))))))((...-.)).........)))).)).)))))))).....-- ( -27.50, z-score = -2.33, R) >droYak2.chr2R 10552301 95 + 21139217 -------------------GUGUCCUGUUUGCGUUAUUUAUGCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUGGCC-AGACUUAUCCUUUGACUCACGCUGACGCCUUGC-- -------------------(((((..((.((.((((.(((((.((((((((.((((......)))))))))))))))))..-.((....))...)))).)).)).))))).....-- ( -25.30, z-score = -1.76, R) >droEre2.scaffold_4845 7359644 95 - 22589142 -------------------GUGUCCUGUUUGCGUUAUUUAUGCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUGGCC-AGACUUAUCCUUUGACUCUCGCUGACGCCUUGC-- -------------------...........((((((..((((.((((((((.((((......))))))))))))))))((.-(((.(((.....))).))).)))))))).....-- ( -26.90, z-score = -2.51, R) >droAna3.scaffold_13266 5098276 116 - 19884421 GGUGUGCUUGUGUCUGUGAGUGUCCUGUUUGCGUUAUUUAUGCGCGAGCAUUAAAAUACAAUUUUUAUGCUCAGCAUCGCC-AGACUUAUCCUUUGACUCCCGCUGACGCCUUUUGC (((((((..(.(((...(((.(....(((((((......((((..((((((.((((......)))))))))).)))))).)-))))....)))).))).)..))..)))))...... ( -30.50, z-score = -1.64, R) >dp4.chr3 14502114 91 - 19779522 -------------GGACCAGUGUCCUGUUUGUGUUAUUUAUGCGAUGGCAUUAAAAUACAAUUUUUAUGCC-----------AGACUUAUCCUUUGACUCCCGCAUCGCCACCGC-- -------------((((....)))).....(((......(((((.((((((.((((......)))))))))-----------)((.(((.....))).)).)))))...)))...-- ( -18.60, z-score = -1.06, R) >droPer1.super_2 3553619 91 - 9036312 -------------GGACCAGUGUCCUGUUUGUGUUAUUUAUGCGAUGGCAUUAAAAUACAAUUUUUAUGCC-----------AGACUUAUCCUUUGACUCCCGCAUCGCCACCGC-- -------------((((....)))).....(((......(((((.((((((.((((......)))))))))-----------)((.(((.....))).)).)))))...)))...-- ( -18.60, z-score = -1.06, R) >droWil1.scaffold_180699 1343579 90 + 2593675 --------------AGUAUUCGUCCUGUUUGUGUUAUUUAUGCGCGAGCAUUAAAAUACAAUUUUUAUGCUUGGCAUUGCCCAGAGUUAUCCUUUGACUCCCGC------------- --------------.(((((.....(((((((((.......)))))))))....))))).........((..(((...)))..((((((.....))))))..))------------- ( -19.90, z-score = -1.87, R) >consensus ___________________GUGUCCUGUUUGCGUUAUUUAUGCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCC_AGACUUAUCCUUUGACUCACGCGGACGCCUUGC__ .....................(((......((((.......))))((((((.((((......)))))))))).......................)))................... (-12.84 = -12.64 + -0.20)
| Location | 10,618,237 – 10,618,341 |
|---|---|
| Length | 104 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.10 |
| Shannon entropy | 0.43037 |
| G+C content | 0.48289 |
| Mean single sequence MFE | -21.56 |
| Consensus MFE | -11.33 |
| Energy contribution | -12.19 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.545740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10618237 104 + 21146708 GCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCCAGACUUAUCCUUUGACUCACGCGGACGCCUU--GCUAUUCCCAAUCCUUGGCUCAUC-CCAGUCUCA- (.((((((((.((((......)))))))))))))...((((((.(((.....))).))..((((.....))--)).............)))).....-.........- ( -21.40, z-score = -0.63, R) >droSim1.chr2R 9383546 104 + 19596830 GCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCCAGACUUAUCCUUUGACUCACGCGGACGCCUU--GCUAUUCCCAAUGCUUGGCUCAUU-CCAGUCUCA- ((((((((((.((((......))))))))))))........((.(((.....))).))..))(((.(((..--((..........))..)))....)-)).......- ( -25.60, z-score = -1.60, R) >droSec1.super_1 8138326 104 + 14215200 GCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCCAGACUUAUCCUUUGACUCACGCGGACGCCUU--GCUAUUCCCAAUGCUUGGCUCAUU-CCAGUCUCA- ((((((((((.((((......))))))))))))........((.(((.....))).))..))(((.(((..--((..........))..)))....)-)).......- ( -25.60, z-score = -1.60, R) >droYak2.chr2R 10552323 104 + 21139217 GCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUGGCCAGACUUAUCCUUUGACUCACGCUGACGCCUU--GCUAUUCCCAGUGCCUGGCUCAUU-CCAAUCUCA- (.((((((((.((((......)))))))))))))((((((((.....((....))....(((((.......--........))))).))))).))).-.........- ( -24.86, z-score = -1.24, R) >droEre2.scaffold_4845 7359666 104 - 22589142 GCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUGGCCAGACUUAUCCUUUGACUCUCGCUGACGCCUU--GCUAUUCCCAGUGCCUGGCUCAUU-CCAAUCUCA- (.((((((((.((((......)))))))))))))..(((.(((.(((.....))).))).)))((.(((..--((..........))..)))))...-.........- ( -26.00, z-score = -1.65, R) >droAna3.scaffold_13266 5098317 106 - 19884421 GCGCGAGCAUUAAAAUACAAUUUUUAUGCUCAGCAUCGCCAGACUUAUCCUUUGACUCCCGCUGACGCCUUUUGCUAUUCCCAAUUCCUUGUUCAUU-CCAUUUAGA- ..((((((((.((((......)))))))))).((.((((..((.(((.....))).))..)).)).)).....))......................-.........- ( -15.80, z-score = -0.86, R) >dp4.chr3 14502142 96 - 19779522 GCGAUGGCAUUAAAAUACAAUUUUUAUGC----------CAGACUUAUCCUUUGACUCCCGCAU-CGCCACC-GCCACUGCCAUCGCCACCUCCAUUUCCAAUCCCAA (((((((((................((((----------..((.(((.....))).))..))))-.((....-))...)))))))))..................... ( -19.90, z-score = -4.26, R) >droMoj3.scaffold_6496 24546526 80 + 26866924 GCGCGCGCAUUAAAAUACAAUUUUUAUGCUUGGCAUUGCCAGACUUAUCCUUUGACUCCCGCAU-CGCCCA--UCUGUCCCCA------------------------- (((.((((((.((((......))))))))(((((...)))))..................))..-)))...--..........------------------------- ( -13.30, z-score = -0.49, R) >consensus GCGCGGGCAUUAAAAUACAAUUUUUAUGCUCGCCAUCGCCAGACUUAUCCUUUGACUCACGCGGACGCCUU__GCUAUUCCCAAUGCCUGGCUCAUU_CCAAUCUCA_ ((((((((((.((((......)))))))))))...((((..((.(((.....))).))..)))).)))........................................ (-11.33 = -12.19 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:12 2011