| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,875,806 – 2,875,857 |
| Length | 51 |
| Max. P | 0.955063 |
| Location | 2,875,806 – 2,875,857 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 63.73 |
| Shannon entropy | 0.66039 |
| G+C content | 0.61427 |
| Mean single sequence MFE | -17.95 |
| Consensus MFE | -9.26 |
| Energy contribution | -9.34 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.955063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2875806 51 + 23011544 CAGUCCCCAGCACGGCUCCAGUUGUAAUGGCGAACCGGAGCCGGAACCUCA ............(((((((.(((((....)).))).)))))))........ ( -17.20, z-score = -1.36, R) >droWil1.scaffold_180772 3014405 51 - 8906247 UAGUCCACAGCAUGGCUCAAGCUGUAAUGGGGAAGAUGAAGCAGCGACUAU (((((...(((...)))...(((((...............)))))))))). ( -9.86, z-score = 0.42, R) >droSec1.super_5 1034683 51 + 5866729 CAGUCCCCAGCACGGCUCCAGUUGCAAUGGCGAGUCGGAGCCGGAGGCUCA ........(((.((((((((.((((....)))).).)))))))...))).. ( -22.40, z-score = -2.06, R) >droSim1.chr2L 2836541 51 + 22036055 CAGUCCCCAGCACGGCUCCAGUUGCAAUGGCGAGUCGGAGUCGGAGGCUCA ........(((.((((((((.((((....)))).).)))))))...))).. ( -19.70, z-score = -1.51, R) >triCas2.ChLG7 12854252 50 - 17478683 -GGCCUCCAGGGAGGCAUCGCCGAUUCGGAUGUUCAGGAGUCGGGACGUGU -.(((((....))))).((.(((((((.(.....)..)))))))))..... ( -20.60, z-score = -1.62, R) >consensus CAGUCCCCAGCACGGCUCCAGUUGUAAUGGCGAACCGGAGCCGGAGCCUCA ............(((((((..((((....))))...)))))))........ ( -9.26 = -9.34 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:27 2011