| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,579,005 – 10,579,107 |
| Length | 102 |
| Max. P | 0.725298 |
| Location | 10,579,005 – 10,579,107 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.59 |
| Shannon entropy | 0.57875 |
| G+C content | 0.42750 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -10.95 |
| Energy contribution | -11.53 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.725298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10579005 102 + 21146708 ---CUGUGCAAAUAGCAAA-CGCAAAAAUGCUGUUUUGCAAUCCA----AUAC-AAAUUGUAAAAGCUGAGUGG------CUCCGCUCCAGACGUAAAACCAUUUGAUCCUGCACCG- ---..(((((....((...-.))..(((((..(((((((......----.(((-.....)))...((((((((.------...)))).))).))))))))))))).....)))))..- ( -24.00, z-score = -1.86, R) >droAna3.scaffold_13266 5062369 114 - 19884421 ---CAGUGCAAUUUGCAAC-CGCACAAAUGCUGGCUACCAAUCGAUACUACGGGAAAUAGUUAAGGGGGAAUGGAAAUAGUUCCACUCUCGACUUGAUACCUUUUAAUCCCGACCCCG ---.((((((.(((((...-.))).)).)))(((...)))......))).(((((....((..(((((((((.......))))).))))..))((((......)))))))))...... ( -25.40, z-score = -0.29, R) >droEre2.scaffold_4845 7319759 103 - 22589142 ---CUGUGCAAAUGGAAAAACGCAAAAAUGCUGUUUUGCAAUCCA----ACAC-AAAUUGCAAAAGCUGAGUGG------CUCCACUCCAGACGUGAACCCAUUUGAUCCUGCCCCU- ---.....(((((((....((((......(((..((((((((...----....-..))))))))))).(((((.------...)))))..).)))....)))))))...........- ( -26.30, z-score = -2.31, R) >droYak2.chr2R 10511582 103 + 21139217 ---CUGUGCAAUUGGCAAA-CGCAAAAAUGCUGUUUUGCAAUCCA----AUAACAAAAUGUAAAAGCUGAGUGC------CUCCACUGCAGACGUGAACCCAUUUGAUCCUGUGCCG- ---..........((((..-.((((((......))))))......----......(((((.....((((((((.------...)))).))).).......))))).......)))).- ( -18.30, z-score = 0.72, R) >droSec1.super_1 8099980 102 + 14215200 ---CUGUGCAAAUGGCAAA-CGCAAAAAUCCUGUUUUGCAAUCCA----AUAA-AAAUUGUGAAAGCUGAGUGG------CUCCACUCCAGACGUGAACCCAUUUGAUCCUGCACCG- ---..((((((((((...(-(((((((......))))))..((((----((..-..)))).))..((((((((.------...)))).))).)))....)))))......)))))..- ( -24.10, z-score = -1.76, R) >droSim1.chr2R 9343199 102 + 19596830 ---CUGUGCAAAUGGCAAA-CGCAAAAAUGCUGUUUUGCAAUCCA----AUAC-AAAUUGUGAAAGCUGAGUGG------CUCCACUCCAGACGUGAACCCAUUUGAUCCUGCACCG- ---..((((((((((...(-(((......(((..((..((((...----....-..))))..))))).(((((.------...)))))..).)))....)))))......)))))..- ( -24.30, z-score = -1.06, R) >droWil1.scaffold_180569 215492 103 - 1405142 GGAGUGCGUUAACAAAAUAUUUGAAAAAAAGUAUUAUCAACUUAA----AUCUCUUGUUG--AAAAAUGUUUGGAAAU--UUCCA----AAAAACGCAGCAAUUU--UCCAAUGUCA- ((((((((((.....(((((((......))))))).(((((....----.......))))--)......((((((...--.))))----)).))))))......)--))).......- ( -20.20, z-score = -2.24, R) >consensus ___CUGUGCAAAUGGCAAA_CGCAAAAAUGCUGUUUUGCAAUCCA____AUAC_AAAUUGUAAAAGCUGAGUGG______CUCCACUCCAGACGUGAACCCAUUUGAUCCUGCACCG_ .....(((((...........((((((......))))))...........................((((((((........))))).)))...................)))))... (-10.95 = -11.53 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:07 2011