| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,469,734 – 10,469,796 |
| Length | 62 |
| Max. P | 0.620159 |
| Location | 10,469,734 – 10,469,796 |
|---|---|
| Length | 62 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 87.73 |
| Shannon entropy | 0.23668 |
| G+C content | 0.64718 |
| Mean single sequence MFE | -23.79 |
| Consensus MFE | -19.00 |
| Energy contribution | -18.93 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10469734 62 + 21146708 CUUCCGCCCACAGUGGUUACUGUGCGACUUCCGCUGCGCAGCGGAAACUGCGGUAACACCGC ....(((..(((((....))))))))..(((((((....)))))))...((((.....)))) ( -23.00, z-score = -1.51, R) >droAna3.scaffold_13266 10863428 62 + 19884421 CAUCCGCCCAUGGAGGUUGCUGUGCGGCUUCCGUUGCGCAGCGGAAACUGCGGUAACGCCCC ..((((((......))).((((((((((....)))))))))))))....(((....)))... ( -25.20, z-score = -1.05, R) >droEre2.scaffold_4845 7204957 62 - 22589142 CUUCCGCCCACAGUGGUUACUGUGCGACUUCCGCUGCGCAGCGGAAACUGCGGUAACGCCCC ...(((((((((((....)))))).)..(((((((....)))))))...))))......... ( -22.70, z-score = -1.54, R) >droYak2.chr2R 10398402 62 + 21139217 CUUCCGCCCACAGUGGUUACUGUGUGACUUCCGCUGCGCAGCGGAAACUGCGGUAACGCCCC ...((((.((((((....))))))....(((((((....)))))))...))))......... ( -22.70, z-score = -1.75, R) >droSec1.super_1 7986907 62 + 14215200 CUUCCGCCCACAGUGGUUACUGUGCGACUUCCGCUGCGCAGCGGAAACUGCGGUAACAGCGC ...(((((((((((....)))))).)..(((((((....)))))))...))))......... ( -22.70, z-score = -0.86, R) >droSim1.chr2R 9231179 62 + 19596830 CUUCCGCCCACAGUGGUUACUGUGCGACUUCCGCUGCGCAGCGGAAACUGCGGUAACACCGC ....(((..(((((....))))))))..(((((((....)))))))...((((.....)))) ( -23.00, z-score = -1.51, R) >dp4.chr3 5109130 62 + 19779522 CUUCCGCCCGUAGAGGCUGCCCUGCUCCUUCCGUUGCGCAGCGGAAGCUGCGGUAACGCCUC ............(((((....((((..((((((((....))))))))..))))....))))) ( -25.50, z-score = -1.87, R) >droPer1.super_2 5309925 62 + 9036312 CUUCCGCCCGUAGAGGCUGCCCUGCUCCUUCCGUUGCGCAGCGGAAGCUGCGGUAACGCCUC ............(((((....((((..((((((((....))))))))..))))....))))) ( -25.50, z-score = -1.87, R) >consensus CUUCCGCCCACAGUGGUUACUGUGCGACUUCCGCUGCGCAGCGGAAACUGCGGUAACGCCCC ...((((.(((((......)))))....(((((((....)))))))...))))......... (-19.00 = -18.93 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:58 2011