| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,862,369 – 2,862,463 |
| Length | 94 |
| Max. P | 0.988416 |
| Location | 2,862,369 – 2,862,463 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 69.55 |
| Shannon entropy | 0.47489 |
| G+C content | 0.49109 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -15.36 |
| Energy contribution | -16.18 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.988416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2862369 94 - 23011544 ---UCCGGUUCUCUUUCACUCGCACUUUUGAGUGGCUUCAUCGAGUGCUGUGCGUACUCGAAUUCUUUUUCUUUAUUAACCCACCACCACCAGCAAG ---...(((......(((((((......))))))).....((((((((.....)))))))).....................)))............ ( -20.90, z-score = -2.39, R) >droAna3.scaffold_12916 725719 79 - 16180835 AAGUGUGUCUCUCAGCCACUCUCUCCCCAGUGGGGCUUAUUGAGGGGCCA-----GCACCAGUUC-------UUAUUAACUUAGCAGCAAC------ ..((((((((((((((((((........)))))......)))))))))..-----))))..(((.-------(((......))).)))...------ ( -19.50, z-score = 0.45, R) >droSec1.super_5 1021430 88 - 5866729 ---UCCGGUUCUCUUCCACUCGCGCUUUUGAGUGGCUUCUUCGAGUGCUGCGCGUACUCGAAUUCUUUUUCUUUAUUAACCCACCAGCAAG------ ---...(((......(((((((......)))))))....(((((((((.....)))))))))....................)))......------ ( -23.50, z-score = -2.76, R) >droSim1.chr2L 2822983 88 - 22036055 ---UCCGGUUCUCUUCCACUCGCACUUUUGAGUGGCUUCUUCGAGUGCGGCGCGUACUCGAAUUCUUUUUCUUUAUUAACCCACCAGCAAG------ ---...(((......(((((((......)))))))....((((((((((...))))))))))....................)))......------ ( -24.40, z-score = -3.11, R) >consensus ___UCCGGUUCUCUUCCACUCGCACUUUUGAGUGGCUUCUUCGAGUGCUGCGCGUACUCGAAUUCUUUUUCUUUAUUAACCCACCAGCAAC______ ......(((......(((((((......)))))))....(((((((((.....)))))))))....................)))............ (-15.36 = -16.18 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:26 2011