| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,468,807 – 10,468,865 |
| Length | 58 |
| Max. P | 0.598922 |
| Location | 10,468,807 – 10,468,865 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 93.45 |
| Shannon entropy | 0.11810 |
| G+C content | 0.36207 |
| Mean single sequence MFE | -10.16 |
| Consensus MFE | -9.54 |
| Energy contribution | -9.74 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10468807 58 + 21146708 AAACUAAAUAUUCUAAAUCCCCAACGAAGUUAGGAUGCCCUGGCUUUAGUUUAAGCUU ((((((((..(((............)))((((((....))))))))))))))...... ( -10.30, z-score = -1.03, R) >droEre2.scaffold_4845 7203881 58 - 22589142 AACCAAAAUAUUCCAAAUCCCCAACGAAGUUAGGAUGCCCUGGCAUUAGAUUAAGCUU ............................((((((....)))))).............. ( -7.20, z-score = -0.16, R) >droYak2.chr2R 10397329 58 + 21139217 AAACGAAAUAUUCUAAAUCCCCAACGAAGUUAGGAUGCCCUGGCUUUAGCUUAAGCUU .........................(((((((((....)))))))))(((....))). ( -11.50, z-score = -1.27, R) >droSec1.super_1 7985972 58 + 14215200 AAACUAAAUAUUCUAAAUCCUCAACGAAGUUAGGAUGUCCUGGCUUUAGUUUAAGCUU ((((((((..(((............)))((((((....))))))))))))))...... ( -10.90, z-score = -1.55, R) >droSim1.chr2R 9230265 58 + 19596830 AAACUAAAUAUUCUAAAUCCUCAACGAAGUUAGGAUGUCCUGGCUUUAGUUUAAGCUU ((((((((..(((............)))((((((....))))))))))))))...... ( -10.90, z-score = -1.55, R) >consensus AAACUAAAUAUUCUAAAUCCCCAACGAAGUUAGGAUGCCCUGGCUUUAGUUUAAGCUU .........................(((((((((....)))))))))........... ( -9.54 = -9.74 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:56 2011