| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,466,901 – 10,466,985 |
| Length | 84 |
| Max. P | 0.989625 |
| Location | 10,466,901 – 10,466,985 |
|---|---|
| Length | 84 |
| Sequences | 7 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Shannon entropy | 0.43580 |
| G+C content | 0.38030 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -7.85 |
| Energy contribution | -9.10 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10466901 84 + 21146708 CCCAAGAAGUAUGCUAGGAAAAAUAGUAUGCAGAAAACGAAACCGACGUUUUCUUAUUGCUAGCCCAAAGAACAGGAAACGAAA .((.....((((((((.......))))))))((((((((.......))))))))....................))........ ( -17.50, z-score = -2.76, R) >droSim1.chr2R 9228376 83 + 19596830 CCCAAGAAGUAUGCUAAGAAAAGUAGUAUGCAGAAAACGAAACCGACGUUUUCUUAUUGCUAGCC-AAAGAACAGGAAACGAAA .((.....((((((((.......))))))))((((((((.......))))))))...........-........))........ ( -16.70, z-score = -2.68, R) >droSec1.super_1 7984131 83 + 14215200 CCCAAGAAGUAUGCUAAGAAAAAUAGUAUGCAGAAAACGAAACGGACGUUUUCUUAUUGCUAGCC-AAAGAACAGGAAACGAAA .((.....((((((((.......))))))))((((((((.......))))))))...........-........))........ ( -16.70, z-score = -2.54, R) >droYak2.chr2R 10395416 81 + 21139217 CCCAAGAAGUAUGCUAAGAAAAAUAGUAUGCAGAAAACGAAACCGACGUUUUCUUAUUGC--GCC-GAAGAACAGGAAACGAAA .((.....((((((((.......))))))))((((((((.......))))))))......--...-........))........ ( -16.70, z-score = -2.84, R) >droEre2.scaffold_4845 7202015 81 - 22589142 CCCAAGAAGUAUGCUAAGAAAAAUAGUAUGCAGAAAAUGAAAGCGACGUUUUCUUAUUGC--GCC-GAAGAACAGGAAACGAAA .((.....((((((((.......))))))))((((((((.......))))))))......--...-........))........ ( -14.90, z-score = -1.81, R) >dp4.chr3 5106860 69 + 19779522 CCCGAAAAGUAUGCUAAGAAAAAUAGCA----------GAUAC-----UUUUAUUCCUACGGGAAUGACGAAAAGAAACAGAAA ..((((((((((((((.......)))))----------..)))-----))))(((((....)))))..)).............. ( -16.00, z-score = -4.59, R) >droPer1.super_2 5307648 65 + 9036312 CCCGAAAAGUAUGCUAAGAAAAAUAGCA----------GAUAC-----UUUUAUUCCUACGGGAAUGAAGAGCAGAAAGC---- ....((((((((((((.......)))))----------..)))-----))))(((((....)))))..............---- ( -15.20, z-score = -3.29, R) >consensus CCCAAGAAGUAUGCUAAGAAAAAUAGUAUGCAGAAAACGAAACCGACGUUUUCUUAUUGCUAGCC_GAAGAACAGGAAACGAAA ........((((((((.......))))))))...............((((((((...................))))))))... ( -7.85 = -9.10 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:55 2011