| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,460,544 – 10,460,635 |
| Length | 91 |
| Max. P | 0.871643 |
| Location | 10,460,544 – 10,460,635 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 85.57 |
| Shannon entropy | 0.26447 |
| G+C content | 0.31910 |
| Mean single sequence MFE | -18.88 |
| Consensus MFE | -15.04 |
| Energy contribution | -15.73 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10460544 91 - 21146708 AUUUAAAUAAAUGAAAUGAAUAAUACAUAAGCGAUAUA-----AAGAGAGCGG--UUUAGCUUUCGCAAACAAAUGUGAGUCGCAAUGUGACUCAGUU .............................(((......-----..((((((..--....))))))...........((((((((...))))))))))) ( -18.60, z-score = -1.60, R) >droAna3.scaffold_13266 10854513 96 - 19884421 AUUUAAAUAAAUAAAAUGAAUAAUACAUCCGAGAGAUACGAGGCAGAGAGCAGGCCAUAGCUUUCGAGAGAAAAUGUGACUCAGUUUAAGGCAAAA-- .(((((((.....................(....)....(((((.....))....((((..((((....)))).)))).))).)))))))......-- ( -13.80, z-score = -0.22, R) >droEre2.scaffold_4845 7195666 91 + 22589142 AUUUAAAUAAAUAAAAUGAAUAAUACAUUUGCGAUAUA-----AAGAGAGCGG--UUUAGCUUUCGCAAACAAAUGUGAGUCGCAAUGUGACUCAGUU ........................(((((((.......-----..((((((..--....)))))).....)))))))(((((((...))))))).... ( -21.54, z-score = -2.64, R) >droYak2.chr2R 10389151 91 - 21139217 AUUUAAAUAAUUAAAAUGAAUAAUACAUUUGCGAUAUA-----AAGAGAGCGU--UUUAGCUUUCGAAAACAAAUGUGAGUCGCCAUGUGACUCAAUU ........................(((((((.......-----..((((((..--....)))))).....)))))))(((((((...))))))).... ( -21.54, z-score = -3.21, R) >droSec1.super_1 7977855 91 - 14215200 AUUUAAAUAAAUAAAAUGAAUAAUACAUAUGCGAGAUA-----AAGAGAGCGG--UUUAGCUUUCGCAAACAAAUGUGAGUCGCAAUGUGACUCAGUU ................(((....(((((.(((((....-----..((((((..--....))))))(((......)))...))))))))))..)))... ( -18.90, z-score = -1.72, R) >droSim1.chr2R 9221320 91 - 19596830 AUUUAAAUAAAUGAAAUGAAUAAUACAUAUGCGAGAUA-----AAGAGAGCGG--UUUAGCUUUCGCAAACAAAUGUGAGUCGCAAUGUGACUCAGUU ................(((....(((((.(((((....-----..((((((..--....))))))(((......)))...))))))))))..)))... ( -18.90, z-score = -1.42, R) >consensus AUUUAAAUAAAUAAAAUGAAUAAUACAUAUGCGAGAUA_____AAGAGAGCGG__UUUAGCUUUCGCAAACAAAUGUGAGUCGCAAUGUGACUCAGUU .............................................((((((........))))))...........((((((((...))))))))... (-15.04 = -15.73 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:55 2011