| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,454,391 – 10,454,506 |
| Length | 115 |
| Max. P | 0.894312 |
| Location | 10,454,391 – 10,454,506 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 83.27 |
| Shannon entropy | 0.30172 |
| G+C content | 0.50380 |
| Mean single sequence MFE | -27.11 |
| Consensus MFE | -18.88 |
| Energy contribution | -18.97 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10454391 115 - 21146708 AACUAAACUCUCUCUCUAUGCGUGUCGUCCUUUGUUGACCAUGUUCUGGUCGAU--UGUGGACCCAGUCGUUAAUUGCCUUGGCAAACC-CACACCGCCCUCGUCCUUUCGUCCUUUC ...................((((((.((((...((((((((.....))))))))--...))))...........((((....))))...-.))).))).................... ( -25.40, z-score = -2.23, R) >droSim1.chr2R 9214163 106 - 19596830 AACUAAAC--UCUCUCUAUGCGUGUCGUCCUUUGUUGACCAUGUUCUGGUCGAU--UGUGGACCGAGUCGUUAAUUGCCUUGGCAAACC-CACACCGCCCUCGUCCUUUCG------- ........--.........((((((.((((...((((((((.....))))))))--...))))...........((((....))))...-.))).))).............------- ( -25.40, z-score = -1.84, R) >droSec1.super_1 7971541 113 - 14215200 AACUAAAC--UCUCUCUAUGCGUGUCGUCCUUUGUUGACCAUGUUCUGGUCGAU--UGUGGACCGAGUCGUUAAUUGCCUUGGCAAACC-CACACCGUCCUCGUCCUUUCGUCCUUUC ........--.......(((.((((.((((...((((((((.....))))))))--...))))...........((((....))))...-.))))))).................... ( -24.70, z-score = -1.38, R) >droYak2.chr2R 10382784 108 - 21139217 AACUAAAC----GCUCUAUGCGU---GUCCUUUGUUGACCAUGUUCUGGUCGAU--UGUGGACCGAGUCGUUAAUUGCCUUGGCAAACC-CCCAUCGCCCUCGUCCUUUCGUCCUUAC ......((----((.....))))---((((...((((((((.....))))))))--...))))((((.((....((((....))))...-.....))..))))............... ( -28.10, z-score = -2.81, R) >droEre2.scaffold_4845 7189384 108 + 22589142 AACUAAAC----UCUCUAUGCGU---GUCCUUUGUUGACCAUGUUCUGGUCGAU--UGUGGACCGAGUCGUUAAUUGCCUUGGCAAACG-CCCGCCGCCCUCGUCCUUUAGUCCUUUC .((((((.----.......(((.---((((...((((((((.....))))))))--...))))((.(.((((...(((....)))))))-).)).)))........))))))...... ( -28.39, z-score = -2.66, R) >droAna3.scaffold_13266 10848222 99 - 19884421 AACUAAAC----CCUGUAUGCAU---GUCCUUUGUUGACCAUAUUCUGGUCGGUUGUGUGGGCCAAGUGGUUAAUUGGCUCAGCAAACGACUCAGGACCGCCUUCC------------ ........----.......((..---(((((..((((((((.....)))))(.((((.((((((((........)))))))))))).))))..))))).)).....------------ ( -30.70, z-score = -1.51, R) >consensus AACUAAAC____UCUCUAUGCGU___GUCCUUUGUUGACCAUGUUCUGGUCGAU__UGUGGACCGAGUCGUUAAUUGCCUUGGCAAACC_CACACCGCCCUCGUCCUUUCGUCCUUUC ...................(((....((((...((((((((.....)))))))).....))))...........((((....)))).........))).................... (-18.88 = -18.97 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:54 2011