| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,453,796 – 10,453,865 |
| Length | 69 |
| Max. P | 0.744143 |
| Location | 10,453,796 – 10,453,865 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.43266 |
| G+C content | 0.52475 |
| Mean single sequence MFE | -17.79 |
| Consensus MFE | -10.53 |
| Energy contribution | -10.84 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10453796 69 + 21146708 CUGCCAACUGAAACCGGAG-ACGACUGACUCCCAGUACGCAUCCA-GAUUCGCGAUUGUGGCGAAUCUUUU ...............(((.-.((((((.....)))).))..)))(-(((((((.......))))))))... ( -20.70, z-score = -2.66, R) >droSim1.chr2R 9213588 69 + 19596830 CUGCCAACUGAAACCGGAG-ACAACUGACUCCCAGUACGCAUCCA-GAUUCGCGAUUGUGGCGAAUCUUUU .(((..((((.....((((-........))))))))..)))...(-(((((((.......))))))))... ( -18.90, z-score = -2.28, R) >droSec1.super_1 7970953 69 + 14215200 CUGCCAACUGAAACCGGAG-ACAACUGACUCCCAGUACGCAUCCA-GAUUCGCGAUUGUGGCGAAUCUUUU .(((..((((.....((((-........))))))))..)))...(-(((((((.......))))))))... ( -18.90, z-score = -2.28, R) >droYak2.chr2R 10382113 65 + 21139217 CUGCCAACUGAAACCGGAG-AC----GACUCCCAGUUCGCAUCCA-GAUUCGCGAUUGUGGCGAAUCUUCC .(((.(((((....((...-.)----).....))))).)))...(-(((((((.......))))))))... ( -21.50, z-score = -2.67, R) >droEre2.scaffold_4845 7188698 65 - 22589142 CCGCCAACUGAAACCGGAG-AC----GACUCCCAGUUCGCAUCCA-GAUUCGCGAUUGUGGCGAAUCUUUU ..((.(((((....((...-.)----).....))))).))....(-(((((((.......))))))))... ( -21.20, z-score = -2.64, R) >droAna3.scaffold_13266 10847682 62 + 19884421 CUGUCAACUGAAACCAGAG-AC-------UCCCAGCUCGCAUCUC-AGUUCGCGUUUGUGGCGAAUCUUUC ......(((((.....(((-..-------......))).....))-)))((((.......))))....... ( -11.20, z-score = 0.64, R) >droVir3.scaffold_12875 10552162 70 - 20611582 GGGUGGACAGAGAGGAGAGCAAGACGAACUGUUGGGCAAUGUACGUAGGUCGCGAU-GUGGCGAAUCUUUU ..........((((((..((..(((.....)))..))............((((...-...)))).)))))) ( -12.10, z-score = 1.26, R) >consensus CUGCCAACUGAAACCGGAG_AC_AC_GACUCCCAGUACGCAUCCA_GAUUCGCGAUUGUGGCGAAUCUUUU ..((..((((.....((((.........))))))))..))......(((((((.......))))))).... (-10.53 = -10.84 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:53 2011