| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,441,285 – 10,441,338 |
| Length | 53 |
| Max. P | 0.500000 |
| Location | 10,441,285 – 10,441,338 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 94.97 |
| Shannon entropy | 0.06931 |
| G+C content | 0.38994 |
| Mean single sequence MFE | -11.33 |
| Consensus MFE | -11.12 |
| Energy contribution | -10.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 10441285 53 + 21146708 AAGUUUAUUAAGUACAAGGUUACUAUAAGUAGCAAACUAUAGGUGACCUUCGC ...............(((((((((...(((.....)))...)))))))))... ( -10.80, z-score = -1.33, R) >droSim1.chr2R 9198950 53 + 19596830 AAGGUUAUUAAGUACAGGGUUACUAUAAGUGGCAAACUAUAGGUGACCUGCGC .((((((((...((.((.(((((.....)))))...)).)))))))))).... ( -11.60, z-score = -0.58, R) >droSec1.super_1 7955127 53 + 14215200 AAGGUUAUUAAGUACAGGGUUACUAUAAGUGGCAAACUAUAGGUGACCUGCGC .((((((((...((.((.(((((.....)))))...)).)))))))))).... ( -11.60, z-score = -0.58, R) >consensus AAGGUUAUUAAGUACAGGGUUACUAUAAGUGGCAAACUAUAGGUGACCUGCGC ................((((((((...(((.....)))...)))))))).... (-11.12 = -10.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:52 2011