| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,430,339 – 10,430,413 |
| Length | 74 |
| Max. P | 0.965321 |
| Location | 10,430,339 – 10,430,413 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 91.01 |
| Shannon entropy | 0.16085 |
| G+C content | 0.44924 |
| Mean single sequence MFE | -20.02 |
| Consensus MFE | -18.22 |
| Energy contribution | -18.74 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10430339 74 + 21146708 CCCACAACAAACCAACAAUUUGGCUUUUGUUAGUGGAUCACCUGCUUUUCUGGGCUCCAGGUGAGCUCAUCUUG .((((((((((((((....))))..)))))).)))).((((((((((....))))...)))))).......... ( -22.10, z-score = -2.16, R) >droSim1.chr2R 9188067 73 + 19596830 CCCACAACAAACUAACAAUUUG-CUUUUGUUAGUGGCUCACCUGCUUUUCUGGGCUCCAGGUGAGUUCAUCUUG ..........((((((((....-...))))))))(((((((((((((....))))...)))))))))....... ( -21.90, z-score = -2.81, R) >droSec1.super_1 7944254 72 + 14215200 -CCCCAACAAACUAACAAUUUG-CUUUUGUUAGUGGCUUACCUGCUUUUCUGGGCUCCAGGUGAGUUCAUCUUG -.........((((((((....-...))))))))(((((((((((((....))))...)))))))))....... ( -19.70, z-score = -2.17, R) >droYak2.chr2R 10358667 73 + 21139217 CUACUAACAAACUAACAAUUUG-UUUUUGUUCGUGGCUAACCUGCUUCUCUGGGCGCCAGGUGAGUUCAUCUUG ((((.((((((..(((.....)-)))))))).)))).......((((..((((...))))..))))........ ( -14.50, z-score = -0.62, R) >droEre2.scaffold_4845 7164056 73 - 22589142 CACCCAACAAACUAACAAUUUG-UUUUUGUUAGUGGCUCACCUGCUUUUCUGGGCUCCAGGUGAGUUCAUCUUG ..........((((((((....-...))))))))(((((((((((((....))))...)))))))))....... ( -21.90, z-score = -2.91, R) >consensus CCCCCAACAAACUAACAAUUUG_CUUUUGUUAGUGGCUCACCUGCUUUUCUGGGCUCCAGGUGAGUUCAUCUUG ..........((((((((........))))))))(((((((((((((....))))...)))))))))....... (-18.22 = -18.74 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:50 2011