| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,428,254 – 10,428,357 |
| Length | 103 |
| Max. P | 0.518991 |
| Location | 10,428,254 – 10,428,357 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.38 |
| Shannon entropy | 0.33417 |
| G+C content | 0.46381 |
| Mean single sequence MFE | -17.81 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.44 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10428254 103 + 21146708 AAUCCUUUGCAGACCCCCCCCUCUCCCCACUCCAUCCCCUUUUGCUUUGCCGCCAGUUUAAGGUUCUUCCUGUGAGC--UGUGGCAACAACUAUAUUUGAAUAUU ........(((((...........................))))).(((((((.(((((((((.....))).)))))--)))))))).................. ( -19.23, z-score = -2.11, R) >droSim1.chr2R 9185991 100 + 19596830 AAUCCUUUGCAGAACACCCCCUUAUCCCCCUCCAU-----UUUGCUUUGCCGCCAGUUUAAGGUUCUUCCUGUGAGCGCUGUGGCAACAGCUAUAUUUGAAUAUU ...................................-----...((((((((((..((((((((.....))).)))))...))))))).))).............. ( -20.00, z-score = -1.29, R) >droSec1.super_1 7942232 100 + 14215200 AAUCCUUUGCAGAACACCCCCUUUCCCCCCUCCAU-----UUUGCUUUGCCGCCAGUUUAAGGUUCUUCCUGUGAGCGCUGUGGCAACAGCUAUAUUUGAAUAUU ...................................-----...((((((((((..((((((((.....))).)))))...))))))).))).............. ( -20.00, z-score = -1.36, R) >droYak2.chr2R 10356040 83 + 21139217 ---------------AGUCCUUUGCAGCCCUCCCC-----UUUGCUUUUCCGCCAGUUUAAGGUUCUUCCUGUGAGC--UGUGGCAACAGCUAUAUUUGAAUAUU ---------------....................-----...(((.((((((.(((((((((.....))).)))))--))))).)).))).............. ( -15.90, z-score = -0.21, R) >droEre2.scaffold_4845 7162064 83 - 22589142 ---------------AAUCCUUUGCAGCCCUCCCA-----UUUGCCUUUCCGCCAGUUUAAGGUUCUUCCUGUGAGC--UGUGGCAACAGCUAUAUUUGAAUAUU ---------------....................-----...((..((((((.(((((((((.....))).)))))--))))).))..)).............. ( -13.90, z-score = 0.31, R) >consensus AAUCCUUUGCAGA_CACCCCCUUGCCCCCCUCCAU_____UUUGCUUUGCCGCCAGUUUAAGGUUCUUCCUGUGAGC__UGUGGCAACAGCUAUAUUUGAAUAUU ...........................................((((((((((..((((((((.....))).)))))...))))))).))).............. (-14.64 = -15.44 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:49 2011