| Sequence ID | dm3.chr2L |
|---|---|
| Location | 333,225 – 333,316 |
| Length | 91 |
| Max. P | 0.810450 |
| Location | 333,225 – 333,316 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 66.57 |
| Shannon entropy | 0.65820 |
| G+C content | 0.52760 |
| Mean single sequence MFE | -25.19 |
| Consensus MFE | -9.78 |
| Energy contribution | -10.26 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 333225 91 - 23011544 -------CAUUGGACAUCGGUCAGUUGGCUGCAACAAGGGAGGACAGACUUUGGGACGGCA-GGGCCGAAAUGCUUGAAGCGGAAGCCAGAGCAUGAAU -------.........((((((.....((((...(((((.........)))))...)))).-.)))))).((((((...((....))..)))))).... ( -30.50, z-score = -2.63, R) >droSim1.chr2L 352905 91 - 22036055 -------CAUUGGACAUCGGUCAGUUGACUGCAACACAGGAGGACAGACUUUGGGACGGCA-GCGCCGAAGUGCUUGAAGCGGAAGCCAGAGCAUGAAU -------.........(((((..((((.(((...(...((((......)))).)..)))))-))))))).((((((...((....))..)))))).... ( -26.60, z-score = -1.02, R) >droSec1.super_14 330567 91 - 2068291 -------CAUUGGACAUCGGUCAGUUGAUUGCAACACGGGAGGACAGACUUUGGGACGGCA-GCGCCGAACUGCUUGAAGCGGAAGCCAGAGCAUGAAU -------..((((....(.(((.((((....)))).(.((((......)))).)))).)..-...))))..(((((...((....))..)))))..... ( -24.60, z-score = -0.47, R) >droYak2.chr2L 329726 99 - 22324452 CAUCGGACAUUGGACAUUGGUGAGUUGACUGCAAUACGAGAGGACUGACUUUUGGGCGGCAGGGGUUGAAGUGCUCGAAGCGGAAGCCAGAGCAUGAAU ..((((.(((..(...)..)))......((((....((((((......))))))....))))...)))).((((((...((....))..)))))).... ( -29.30, z-score = -1.69, R) >droEre2.scaffold_4929 388828 89 - 26641161 -------CAUUGG-CAUCGGUCAGUUGACUGCAAUAC-GGAGGACGGACUUUGGGGCGGCA-GGGCGGAAGUGCUUGGAGCGGAAGACGGAGCAUGGAU -------......-..((.(((...((.((((....(-((((......)))))..))))))-.))).)).((((((.(..(....).).)))))).... ( -26.00, z-score = -1.71, R) >droAna3.scaffold_12943 119081 84 + 5039921 -------CACAGGACAU-GGUCA-----CUGCAAUGGACUAAAGGACAUCUAAGAGAGGGGAAGAUUG--GUGUCUGAAACGGAAGCCAGAGCAUGAAU -------.......(((-(.((.-----((...(((..(....)..)))...))............((--((.((((...)))).)))))).))))... ( -17.80, z-score = -0.64, R) >droWil1.scaffold_180703 2488816 96 + 3946847 --CAAGGAUUAGGAGCUUGAGGUGAAGGAGGAAGCGGUAUGUGGAAAAUGCCAUUGCAAUG-AAAUGGAAUGACUUCAAGCGGAAGUCAGAGCAUGAAU --....((((....(((((((((............(((((.......)))))(((.((...-...)).))).)))))))))...))))........... ( -21.50, z-score = -2.01, R) >consensus _______CAUUGGACAUCGGUCAGUUGACUGCAACACGGGAGGACAGACUUUGGGGCGGCA_GGGCCGAAGUGCUUGAAGCGGAAGCCAGAGCAUGAAU ........................................................((((....))))..((((((...((....))..)))))).... ( -9.78 = -10.26 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:32 2011