| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,422,949 – 10,423,046 |
| Length | 97 |
| Max. P | 0.612334 |
| Location | 10,422,949 – 10,423,046 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.14 |
| Shannon entropy | 0.22042 |
| G+C content | 0.46404 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -22.14 |
| Energy contribution | -23.88 |
| Covariance contribution | 1.74 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10422949 97 + 21146708 AAAAGGACCCAGCUAAAAUGGGGCGAGAGGUGUUGGCUUUUCCGUAUGCCUCACCCUGAAAAGCGUACCAUUUACCAUUUGGCUAUCCUAUCCACCA-- ...((((...(((((((((((..((.((((((((((.....))).)))))))...((....))))..))))......))))))).))))........-- ( -27.20, z-score = -0.93, R) >droEre2.scaffold_4845 7156557 97 - 22589142 -AAAGGACC-AGCUAAAAUGGGACUAGAGGUGUUGGCUUUUCCGUAUGCCUCACCCUGAAAAUCGUACCAUACACCAUUUGGCUAUCCACUACAUUUCU -...(((..-(((((((.(((...(((.((((..(((..........))).)))))))......(((...))).)))))))))).)))........... ( -25.60, z-score = -1.81, R) >droYak2.chr2R 10350203 87 + 21139217 -AAAGGACC-AGCUUAAAUGGGACGAGAGGUGUUGGCUUUUCCGUAUGCCUCACCCUGAAAAGUGUACCAUACACCAUUUGGCUAUUCU---------- -...(((..-((((.((((((...(((((((....))))))).(((((...(((........)))...))))).))))))))))..)))---------- ( -24.50, z-score = -1.30, R) >droSec1.super_1 7935091 88 + 14215200 -AAAGGACC-AGCUAAAAUGGGGCGAGAGAUGUUGGCUUUUCCGUAUGCCUCACCCUGAAAAGUGUACCAUUUACCAUUUGGCUAUCCAC--------- -...(((..-(((((((..((((.(((.(....(((.....)))....)))).))))...(((((...)))))....))))))).)))..--------- ( -22.50, z-score = -0.66, R) >droSim1.chr2R 10415817 90 - 19596830 -AAAGGACC-AGCUAAAAUGGGGCGAGAGGUGUUGGCUUUUCCGUAUGCCUCACCCUGAAAAGUGUACCAUUUACCAUUUGGCUAUCCACAA------- -...(((..-(((((((.(((.....((((((((((.....))).)))))))((.((....)).))........)))))))))).)))....------- ( -26.70, z-score = -1.20, R) >consensus _AAAGGACC_AGCUAAAAUGGGGCGAGAGGUGUUGGCUUUUCCGUAUGCCUCACCCUGAAAAGUGUACCAUUUACCAUUUGGCUAUCCAC_________ ....(((...((((.((((((.....((((((((((.....))).)))))))((.((....)).))........)))))))))).)))........... (-22.14 = -23.88 + 1.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:47 2011