| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,370,106 – 10,370,206 |
| Length | 100 |
| Max. P | 0.525170 |
| Location | 10,370,106 – 10,370,206 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 86.45 |
| Shannon entropy | 0.25791 |
| G+C content | 0.49122 |
| Mean single sequence MFE | -21.91 |
| Consensus MFE | -14.30 |
| Energy contribution | -16.22 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10370106 100 + 21146708 UCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUU----UGCCAACCUGAUCGCCGGUAUUUUUAGUUUC .....(((.((..((((...((((((.((.....)).))))))..........((((.((((.......----)))))))))))).)).)))............ ( -24.50, z-score = -2.75, R) >droEre2.scaffold_4845 7104719 100 - 22589142 UCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUUGUUCGGUAUUCUCUU----CGCCAACCUGAUCGCCGGUAUUUUUAGUUUC .....(((.((..((((...((((((.((.....)).))))))...........(((.(((........----.)))))).)))).)).)))............ ( -18.50, z-score = -1.25, R) >droYak2.chr2R 10296787 100 + 21139217 UCCGCACCUGUUUAUCAUUCGCUCCUUCUUUUCAAGCAGGAGCACCCUGUUCAUGUUCGGUAUUCUCUU----UGCCAACCUGAUCGCCGGUAUUUUUAGUUUC .((((...............((((((.((.....)).)))))).....(.(((.(((.((((.......----))))))).))).)).)))............. ( -21.90, z-score = -2.51, R) >droSec1.super_1 7882235 100 + 14215200 UCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUU----UGCCAACCUGAUCGCCGGUAUUUUUAGUUUC .....(((.((..((((...((((((.((.....)).))))))..........((((.((((.......----)))))))))))).)).)))............ ( -24.50, z-score = -2.75, R) >droSim1.chr2R 9125472 100 + 19596830 UCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUU----UGCCAACCUGAUCGCCGGUAUUUUUAGUUUC .....(((.((..((((...((((((.((.....)).))))))..........((((.((((.......----)))))))))))).)).)))............ ( -24.50, z-score = -2.75, R) >droAna3.scaffold_13266 14696901 104 + 19884421 CCCGCACCUGUUCAACAACCGCUCCUGGUCGCCUGCCUGUUCCGCUCUCUGCCGGCACUCUCUUUUUCUGACUUUCCAACCUGAUCGCCGGUAUUUUUAGGUCC .....(((((..........((....(((.....)))......))....(((((((..((......................))..)))))))....))))).. ( -17.55, z-score = 0.53, R) >consensus UCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUU____UGCCAACCUGAUCGCCGGUAUUUUUAGUUUC .....(((.((..((((...((((((.((.....)).))))))..........((((.((((...........)))))))))))).)).)))............ (-14.30 = -16.22 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:39 2011