| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,369,627 – 10,369,744 |
| Length | 117 |
| Max. P | 0.893501 |
| Location | 10,369,627 – 10,369,744 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.28 |
| Shannon entropy | 0.30977 |
| G+C content | 0.31518 |
| Mean single sequence MFE | -25.54 |
| Consensus MFE | -15.52 |
| Energy contribution | -17.68 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10369627 117 + 21146708 UUAAAAGUAUUAAAAGUUUUUCGCUUAAUAUGCUAUUCCCCUUAAUUGAGCUGGUGUAACCUAACAGUACACUCUAUUUAGUUGCAUUAAUCAAAGUAAUUGUUAAGCGAAAUUCAC ...............(..((((((((((((((((...........((((..(((((((((..((.((......)).))..))))))))).))))))))..))))))))))))..).. ( -26.50, z-score = -3.38, R) >droEre2.scaffold_4845 7104193 114 - 22589142 UUUAAAGUA---ACUUUUUUGCGCUGAAGAUGCUAAUUACUUGUAUGGAGCUAGCUUAACUUAAAAGUACACUUUAUUUAGUUGAAUUAAUCAAGGUAAUUGCUAAGCGAAAUUCAC .........---.........((((......((.((((((((.....((..(((.((((((..((((....))))....)))))).))).)).))))))))))..))))........ ( -18.80, z-score = 0.85, R) >droYak2.chr2R 10296281 108 + 21139217 UUAAAAGUA---ACUUUUUUGCGCUCAAGAUGCUAAUUACC----UAGAGCUAGCUUAACUUAAUAGGACAC--UAUUUAGUUGCAUUUAUCAAGGUAAUUGUUAAGCGAAAUUCAC .........---....((((((((.......))((((((((----(.((....((..((((.(((((....)--)))).)))))).....)).)))))))))....))))))..... ( -24.00, z-score = -1.74, R) >droSec1.super_1 7881751 113 + 14215200 UUAAGAAUA----ACGUUUUUCGCUUAACUUGCUUUUUCCCCUAAUUGAGCUGGUGUAACUUAACAGUUCACUCUAUUUAGUUGCAUUAAUCAAGGUAAUUGUUAAGCGAAAUUCAC .........----..(..((((((((((((((((...........((((..((((((((((.((.((......)).)).)))))))))).)))))))))..)))))))))))..).. ( -29.20, z-score = -3.91, R) >droSim1.chr2R 9124977 113 + 19596830 UUAAGAGUA----ACGUUUUUCGCUUAACUUGCUUUUUCCCCUAAUUGAGCUGGUGUAACUUAACAGUUCACUCUAUUUAGUUGCAUUAAUCAAGGUAAUUGUUAAGCGAAAUUCAC .........----..(..((((((((((((((((...........((((..((((((((((.((.((......)).)).)))))))))).)))))))))..)))))))))))..).. ( -29.20, z-score = -3.54, R) >consensus UUAAAAGUA___AACGUUUUUCGCUUAACAUGCUAUUUCCCCUAAUUGAGCUGGUGUAACUUAACAGUACACUCUAUUUAGUUGCAUUAAUCAAGGUAAUUGUUAAGCGAAAUUCAC ..................(((((((((((.((((...........((((..((((((((((.((.((......)).)).)))))))))).))))))))...)))))))))))..... (-15.52 = -17.68 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:38 2011