| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,344,005 – 10,344,068 |
| Length | 63 |
| Max. P | 0.583758 |
| Location | 10,344,005 – 10,344,068 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 88.67 |
| Shannon entropy | 0.18256 |
| G+C content | 0.49635 |
| Mean single sequence MFE | -7.77 |
| Consensus MFE | -7.05 |
| Energy contribution | -7.45 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.583758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10344005 63 - 21146708 GCACUGUGCACAUUGCACCUGUC---CUCUCCUUUCUUUUAGCCCAAAUCCUUUGUCAGUUGCCGU (((((((((.....)))).....---..................(((.....)))..)).)))... ( -6.00, z-score = 0.27, R) >droSim1.chr2R 9108539 56 - 19596830 -------GCACUUUGCACCUGUC---CUCUCCAUUCUUUUAGCCCAAAUCCUUUGUCAGGUGCCGU -------.......(((((((.(---............................).)))))))... ( -9.89, z-score = -2.08, R) >droSec1.super_1 7865456 56 - 14215200 -------GCACUUUGCACCUGUC---CUUUCCAUUCUUUUAGCCCAAAUCCUUUGUCAGUUGCCGU -------.......(((.(((.(---............................).))).)))... ( -3.29, z-score = 0.34, R) >droYak2.chr2R 10278778 59 - 21139217 -------GCACUUUGCACCUGUCCGUCCUCCCAUUCUUUUAGCCCAAAUCCUUUGUCAGGUGCCGU -------.......(((((((.(...............................).)))))))... ( -9.78, z-score = -1.95, R) >droEre2.scaffold_4845 7087820 56 + 22589142 -------GCACUUUGCACCUGUC---CUCUCCAUUCUUUUAGCCCAAAUCCUUUGUCAGGUGCCGU -------.......(((((((.(---............................).)))))))... ( -9.89, z-score = -2.08, R) >consensus _______GCACUUUGCACCUGUC___CUCUCCAUUCUUUUAGCCCAAAUCCUUUGUCAGGUGCCGU ..............(((((((...................................)))))))... ( -7.05 = -7.45 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:35 2011