| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,837,014 – 2,837,066 |
| Length | 52 |
| Max. P | 0.966708 |
| Location | 2,837,014 – 2,837,066 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Shannon entropy | 0.08809 |
| G+C content | 0.37308 |
| Mean single sequence MFE | -11.40 |
| Consensus MFE | -11.34 |
| Energy contribution | -10.82 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2837014 52 - 23011544 AAUAAGUGAUCCAGUUGAUCGCUGGCAUUAGCUUCUAAUUAACUGCUCACCU .....((((..((((((((....(((....)))....)))))))).)))).. ( -14.10, z-score = -2.83, R) >droSec1.super_5 995791 52 - 5866729 AAUAAGUGAUCUAGUUGAUCGCUGGCAUUAGCUUCUAAUUAACUGCUCAUCU ....(((((((.....)))))))((((((((.......)))).))))..... ( -10.50, z-score = -1.22, R) >droSim1.chr2L 2797454 52 - 22036055 AAUAAAUGAUCUAGUUGAUCGCUGGCAUUAGCUUCUAAUUAACUGCUCAUCU .....((((..((((((((....(((....)))....)))))))).)))).. ( -10.10, z-score = -1.63, R) >droEre2.scaffold_4929 2884334 52 - 26641161 AACAAGUGAUCUAGUUAAUCGCUGGCAUUAGCUUCUAAUUAACAGCUCACCU .....((((.((.((((((....(((....)))....)))))))).)))).. ( -11.80, z-score = -2.32, R) >droYak2.chr2L 2830148 52 - 22324452 AAUAAGUGAUCUAGUUGAUCGCUGGCAUUAGCUUCUAAUUAACUGCUCAUCU ....(((((((.....)))))))((((((((.......)))).))))..... ( -10.50, z-score = -1.22, R) >consensus AAUAAGUGAUCUAGUUGAUCGCUGGCAUUAGCUUCUAAUUAACUGCUCAUCU .....((((..((((((((....(((....)))....)))))))).)))).. (-11.34 = -10.82 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:24 2011