| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,329,213 – 10,329,303 |
| Length | 90 |
| Max. P | 0.986263 |
| Location | 10,329,213 – 10,329,303 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.63 |
| Shannon entropy | 0.27875 |
| G+C content | 0.62539 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -24.92 |
| Energy contribution | -25.72 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10329213 90 + 21146708 UGGAGGGGGGGGGGGUGGUAUACAACGACACCCACAA--GGCACCCGG-CAGAGGCCAUCGAUCAGGUGGCGGCUUUGCCGGAAUAGCCAUCC .(((........(((((...........)))))....--(((..((((-(((((((((((.....))))))..)))))))))....))).))) ( -39.70, z-score = -2.40, R) >droSim1.chr2R 9093873 81 + 19596830 ---------AGAGGGGGAGAUACAACGACACCCACAA--GGCACCCGG-CAGAGGCCAUCGAUCAGGUGGCGGCUUUGCCGGAAUAGCCAUCC ---------...((((..(......)..).)))....--(((..((((-(((((((((((.....))))))..)))))))))....))).... ( -35.00, z-score = -3.66, R) >droSec1.super_1 7850895 83 + 14215200 ---------AGAGGGGGAGAUACAACGACACCCACACCCGGCACCCGG-CAGAGGCCAUCGAUCAGGUGGCGGCUUUGCCGGAAUAGCCAUCC ---------...((((..(......)..).)))......(((..((((-(((((((((((.....))))))..)))))))))....))).... ( -35.10, z-score = -2.86, R) >droYak2.chr2R 10263470 75 + 21139217 --------UGGAGGAUGG-GUACAACGACACCCACAA--GGCACACGGGCAGAGGCCAUCGAUCAGGUGGCGGCUUUGCCGGAAUA------- --------.......(((-((........)))))...--......(.(((((((((((((.....))))))..))))))).)....------- ( -27.20, z-score = -2.34, R) >droEre2.scaffold_4845 7073261 75 - 22589142 --------AGGGGGGUGG-AUACAACGACACCCACAA--GGCAGCCGGGCAGAGGCCAUCGAUCAGGUGGCGGCUUUGCCGGAAUA------- --------....(((((.-.........)))))....--.....((((.(((((((((((.....))))))..)))))))))....------- ( -30.00, z-score = -2.18, R) >consensus _________GGAGGGUGG_AUACAACGACACCCACAA__GGCACCCGG_CAGAGGCCAUCGAUCAGGUGGCGGCUUUGCCGGAAUAGCCAUCC ............(((((...........)))))...........((((.(((((((((((.....))))))..)))))))))........... (-24.92 = -25.72 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:34 2011