| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,318,095 – 10,318,185 |
| Length | 90 |
| Max. P | 0.999619 |
| Location | 10,318,095 – 10,318,185 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 74.22 |
| Shannon entropy | 0.44756 |
| G+C content | 0.36272 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.05 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.46 |
| Mean z-score | -4.72 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.09 |
| SVM RNA-class probability | 0.999619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10318095 90 - 21146708 ---------AAGUCCCA----GAAGUGCC--AAGCUAGACAAGAUUUCCA-UUUAGAGGUCUUCGUUUAGUUUGGUAUUUUUGGGAAAUAGUUUUUACUAAGGUUU ---------...(((((----((((((((--(((((((((((((((((..-....)))))))).))))))))))))))))))))))..((((....))))...... ( -42.40, z-score = -9.32, R) >droSim1.chr2R 9081941 90 - 19596830 ---------AAGUCCCA----GAAGUGCC--AAACUAGACAAGAUUUUCA-UUUAAAGGUCUUCGUUUAGUUUGGUAUUUUUGGGAAAUACUUUUUUCUAAGGUUU ---------...(((((----((((((((--(((((((((((((((((..-....)))))))).))))))))))))))))))))))...(((((.....))))).. ( -39.50, z-score = -8.51, R) >droSec1.super_1 7839887 90 - 14215200 ---------AAGUCCCA----GAAGUGCC--AAACUAGACAAUAUUUUCA-UUUAAAGGUCUUCGUUUAGUUUGGUAUUUUUGGGAAAUAGUUUUUUCUAAGGUUU ---------...(((((----((((((((--(((((((((((.(((((..-....))))).)).))))))))))))))))))))))..(((......)))...... ( -32.60, z-score = -6.86, R) >droYak2.chr2R 10251207 103 - 21139217 AAGUCCUCGAAGUGCCGAAACAAAGUACC--AAACUAGACAGGACUUCCA-UUUAAAGGUCUUCUUUUAGUUUGGUGUUUUUCGGGAAUAGUUUGUUCUAAGGUUU ....(((.......((((((...((((((--((((((((.(((((((...-.....)))))))..))))))))))))))))))))((((.....))))..)))... ( -27.50, z-score = -1.88, R) >droEre2.scaffold_4845 7061935 103 + 22589142 AAGUCCUCGAAGUGCCGAAACAAAGUACC--CAGCUAGACAACACUUCCA-UUUAAAGGUCUUCGUUUGGUUUGGUAUUUUUGGGGAAUAGCUAGUUCUAGGGUUU ...((((((((((......))..((((((--.((((((((((.((((...-.....)))).)).)))))))).))))))))))))))....(((....)))..... ( -24.80, z-score = -0.30, R) >droAna3.scaffold_13266 14658600 92 - 19884421 ---------AAGUCCUA----GAAGUGCUGAAAAGAAAACAAAGUCAGGACUCCGAAGGUCUUCAUCUAGUCUACUAUUUUAAGGGAA-AGUACUUUCUAGGGCUU ---------((((((((----((((((((......((((...(((..(((((..(((....)))....)))))))).)))).......-))))).))))))))))) ( -25.32, z-score = -1.47, R) >consensus _________AAGUCCCA____GAAGUGCC__AAACUAGACAAGAUUUCCA_UUUAAAGGUCUUCGUUUAGUUUGGUAUUUUUGGGAAAUAGUUUUUUCUAAGGUUU ............(((((....((((((((..(((((((((((.((((.........)))).)).)))))))))))))))))))))).................... (-12.35 = -12.05 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:32 2011