| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,317,070 – 10,317,176 |
| Length | 106 |
| Max. P | 0.593490 |
| Location | 10,317,070 – 10,317,176 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.52 |
| Shannon entropy | 0.39352 |
| G+C content | 0.55436 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10317070 106 + 21146708 AUGACGACCAUUAGGCACGCGCAUGCGCGACAGCUGCGCCGAGAAAUUAGAUAAAGGUGAUCGGUAC--GAGGGUCGGG-GAACCGAAAGGAUCGACCAGGAUGGCGAU ....((.(((((.((((((((((.((......))))))).((....))........))).))(((.(--((...((((.-...)))).....))))))..))))))).. ( -35.90, z-score = -2.07, R) >droSim1.chr2R 9080910 107 + 19596830 AUGACGACCAUUAGGCACGCGCAUGCGCGACAGCUGCGCCGAGAAAUUAGAUAAAGGUGAUCGGGAC--GAGGGUUGGGUGAACCGAAAGGAUCGACCAGGAUGAUGGU ......(((((((..(.((((....)))).(((((.((((((...(((.......)))..))))..)--)..)))))(((((.((....)).)).))).)..))))))) ( -33.80, z-score = -1.85, R) >droSec1.super_1 7838857 105 + 14215200 AUGACGACCAUUAGGCACGCGCAUGCGCGACAGCUGCGCCGA-AAAUUAGAUAAAGGUGAUCGGGAC--GAGGGUUGGG-GAACCGAAAGGAUCGACCAGGAUGAUGGU ......(((((((..(..(((((.((......)))))))(((-..(((.......)))..)))....--...((((((.-...((....)).)))))).)..))))))) ( -30.80, z-score = -1.12, R) >droYak2.chr2R 10250220 88 + 21139217 AUGACGACCAUUAGGCACGCGCAUGCGCGACAGCUGCUCCGAAAAAUUAGAUAAAGGUGAUCGGGGCGAAAGGAUCGGUCAACAUGGC--------------------- (((..((((....(((.((((....))))...)))(((((((...(((.......)))..))))))).........))))..)))...--------------------- ( -27.10, z-score = -1.42, R) >droEre2.scaffold_4845 7060941 81 - 22589142 AUGACGACCAUUAGGCACGCGCAUGCGCGACAGCUGCUCCGAAAAAUUAGAUAAAGGUGAUCGGGGC--AGGGAACGGGUGGC-------------------------- .......((((..(...((((....))))....(((((((((...(((.......)))..)))))))--))....)..)))).-------------------------- ( -26.20, z-score = -1.65, R) >consensus AUGACGACCAUUAGGCACGCGCAUGCGCGACAGCUGCGCCGAAAAAUUAGAUAAAGGUGAUCGGGAC__GAGGGUCGGG_GAACCGAAAGGAUCGACCAGGAUG__G_U ....(((((....(((.((((....))))...)))...((((...(((.......)))..))))........)))))................................ (-17.52 = -17.88 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:31 2011