| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,308,121 – 10,308,218 |
| Length | 97 |
| Max. P | 0.789999 |
| Location | 10,308,121 – 10,308,218 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.65 |
| Shannon entropy | 0.26239 |
| G+C content | 0.44532 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -14.96 |
| Energy contribution | -16.40 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10308121 97 + 21146708 AAAUUCCAAGCACGUUGCAGGCGAUAUUACGCAAACGACGGUAUAAAAAAA----CACCAGCAACUGCUGCAACUA--ACUACACCAGCAACA-CCAACA-UUAC--- .............(((((..(((......))).......(((.........----...((((....))))......--.....))).))))).-......-....--- ( -17.80, z-score = -1.97, R) >droSim1.chr2R 9070564 104 + 19596830 AAAUUCCAAGCACGUUGCAGGCGAUAUUACGCAAACGGCGGUAUAAAACACAC--CAGCAGCAACUGCUGCAACUACAACUAAAGCAGCAACA-CCAACA-UUACGAA .............(((((..(((......))).....(((((.........))--).(((((....))))).............)).))))).-......-....... ( -24.00, z-score = -2.14, R) >droSec1.super_1 7828031 104 + 14215200 AAAUUCCAAGCACGUUGCUGGCGAUAUUACGCAAACGGCGGUAUAAAACACAC--CAGCAGCAACUGCUGCAACUACAACUAAACCAGCAACA-CCAACA-UUACGAA .............((((((((...(((..(((.....)))..)))........--..(((((....))))).............)))))))).-......-....... ( -27.00, z-score = -3.48, R) >droYak2.chr2R 10241123 108 + 21139217 AAAUUCCAGGCACGUUGCAGACGUUAUUACGCAAACGGCGCUAUAAAACACACUCCAGCAACUGCUGCUGCAACUACAACUACAACUAAAGCAACUAGCAACUAGCAA .........((..(((((((...((((..(((.....)))..)))).........((((....)))))))))))................((.....)).....)).. ( -23.50, z-score = -1.25, R) >consensus AAAUUCCAAGCACGUUGCAGGCGAUAUUACGCAAACGGCGGUAUAAAACACAC__CAGCAGCAACUGCUGCAACUACAACUAAACCAGCAACA_CCAACA_UUACGAA .............(((((((....(((..(((.....)))..)))............(((((....)))))..............)))))))................ (-14.96 = -16.40 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:29 2011