| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,239,308 – 10,239,367 |
| Length | 59 |
| Max. P | 0.915054 |
| Location | 10,239,308 – 10,239,367 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 72.27 |
| Shannon entropy | 0.48274 |
| G+C content | 0.37744 |
| Mean single sequence MFE | -8.46 |
| Consensus MFE | -6.16 |
| Energy contribution | -6.27 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10239308 59 - 21146708 GUAGCCUACUUUCAGGCUGUUCCCCCAAUAAUCAGCUC------AAUUCA-AAAUGUGCAGCUUAA .((((((......))))))...............((.(------(.....-...)).))....... ( -9.50, z-score = -1.08, R) >droEre2.scaffold_4845 6987354 56 + 22589142 GUAGCCUACUUUCAGGCUGCUCUAGC---AAUUAGUUC------CAUUCA-AAAAGUUAAAUUUAA (((((((......)))))))......---.........------......-............... ( -10.50, z-score = -1.89, R) >droYak2.chr2R 10177174 56 - 21139217 GUUGCCUACUUUCAGGCGGUUCUAGC---AAUCAGUUC------CAUUCA-AAAAGUUCAGUUGGA .((((((......)))))).((((((---.........------......-.........)))))) ( -8.26, z-score = 0.08, R) >droSec1.super_1 7747246 56 - 14215200 GUAGCCUACUUUCAGGCUGUUCCACC---AAUCAGCUU------AAUUCA-AAAAAUCCAGCUUAA .((((((......)))))).......---....((((.------.(((..-...)))..))))... ( -8.90, z-score = -2.15, R) >droSim1.chr2R 9003972 56 - 19596830 GUAGCCUACUUUCAGGCUGUUCCACC---AAUCAGCUU------AAUUCA-AAAAAUACAUCUUAA .((((((......)))))).......---.........------......-............... ( -7.10, z-score = -1.93, R) >droWil1.scaffold_180700 2967805 65 + 6630534 GUUGCCUACUUUUAGGCCUUUUGGUUAA-UUUCACCCCGUCAAAAAUUCAUAAAAAUGUCUUUUAA ...(((((....))))).....(((...-....)))......((((..(((....)))..)))).. ( -6.50, z-score = -0.21, R) >consensus GUAGCCUACUUUCAGGCUGUUCCACC___AAUCAGCUC______AAUUCA_AAAAAUGCAGCUUAA .((((((......))))))............................................... ( -6.16 = -6.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:19 2011