| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,211,743 – 10,211,838 |
| Length | 95 |
| Max. P | 0.686547 |
| Location | 10,211,743 – 10,211,838 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.08 |
| Shannon entropy | 0.41591 |
| G+C content | 0.30999 |
| Mean single sequence MFE | -18.41 |
| Consensus MFE | -10.64 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686547 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 10211743 95 + 21146708 --------AUUAUUGUUAUUAUAUGUAUUUGCCAUUAAGCAUUUAUGAUUUUCUGAUUUAUUUCAGCUGCUUUUGUGGCGCCAAAGUCAAAAAGACAAUCAGC --------...((((((.......(((..(((......)))..)))((((((.(((......)))((..(....)..))...)))))).....)))))).... ( -16.80, z-score = -0.14, R) >droSim1.chr2R 8975508 92 + 19596830 --------AUUAUUGUUAUUAUAUGUAUUUGCCAUUAAGCAUUUAUGAUUUUCUGAUUUAUUUCAGCUGCUUUUGUGGCGCCAAAGUCAGAAAGACAAUC--- --------...((((((.......(((..(((......)))..)))...((((((((((......((..(....)..))....)))))))))))))))).--- ( -22.20, z-score = -2.54, R) >droSec1.super_1 7720340 92 + 14215200 --------AUUAUUGUUAUUAUAUGUAUUUGCCAUUAAGCAUUUAUGAUUUUCUGAUUUAUUUCAGCUGCUUUUGUGGCGCCAAAGUCAGAAAGACAAUC--- --------...((((((.......(((..(((......)))..)))...((((((((((......((..(....)..))....)))))))))))))))).--- ( -22.20, z-score = -2.54, R) >droYak2.chr2R 10149359 92 + 21139217 --------AUUAUUGUUAUUAUAUGUAUUUGCCAUUAAGCAUUUAUGAUUUUCUGAUUUAUUUCAGCUGCUUUUGUGGCGCCAAAGUCAAAAAGACAAUC--- --------...((((((.......(((..(((......)))..)))((((((.(((......)))((..(....)..))...)))))).....)))))).--- ( -16.80, z-score = -0.52, R) >droEre2.scaffold_4845 6960231 92 - 22589142 --------AUUAUUGUUAUUAUAUGUAUUCGCCAUUAAGCAUUUAUGAUUUUCUGAUUUAUUUCAGCUGCUUUUGUGGCGCCAAAGUCAAAAAGACAAUC--- --------.....................((((((.(((((...........((((......)))).)))))..)))))).....(((.....)))....--- ( -17.20, z-score = -1.05, R) >droVir3.scaffold_12875 13507772 77 + 20611582 UCUGUCAUAUGAUUAUUAUUAUA--UAUUUGCCAUUAAG-------------CUGGC--------AACAAUUCUAUGGCGCCAAAGUCAAAGAGACAAUC--- ..(((((((((((....))))))--)..((((((.....-------------.))))--------))....(((.((((......)))).)))))))...--- ( -19.70, z-score = -3.09, R) >droGri2.scaffold_15245 600525 78 - 18325388 --GUUAUUAUUGUUAUUAUAAUAUGUAUUUGCCAUUAGGCAGC---------CUAA-----------CAAUUCUAUGGCGCCAAAGUCAAAAAGACAAUC--- --(((((.(((((((.(((.....))).(((((....))))).---------.)))-----------))))...)))))......(((.....)))....--- ( -14.00, z-score = -1.11, R) >consensus ________AUUAUUGUUAUUAUAUGUAUUUGCCAUUAAGCAUUUAUGAUUUUCUGAUUUAUUUCAGCUGCUUUUGUGGCGCCAAAGUCAAAAAGACAAUC___ .............................((((((.(((((....(((..............)))..)))))..)))))).....(((.....)))....... (-10.64 = -11.27 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:17 2011