Locus 4072

Sequence ID dm3.chr2R
Location 10,187,272 – 10,187,340
Length 68
Max. P 0.500000
window5581

overview

Window 1

Location 10,187,272 – 10,187,340
Length 68
Sequences 8
Columns 68
Reading direction reverse
Mean pairwise identity 98.74
Shannon entropy 0.02386
G+C content 0.26838
Mean single sequence MFE -10.90
Consensus MFE -10.75
Energy contribution -10.75
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.86
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr2R 10187272 68 - 21146708
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
...((((..(((((..(.(((((((....(((((.....))))).))))))).).)))))..)))).. ( -11.00, z-score =  -0.84, R)
>droSim1.chr2R 8948978 68 - 19596830
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
...((((..(((((..(.(((((((....(((((.....))))).))))))).).)))))..)))).. ( -11.00, z-score =  -0.84, R)
>droSec1.super_1 7694584 68 - 14215200
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
...((((..(((((..(.(((((((....(((((.....))))).))))))).).)))))..)))).. ( -11.00, z-score =  -0.84, R)
>droYak2.chr2R 10124773 68 - 21139217
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
...((((..(((((..(.(((((((....(((((.....))))).))))))).).)))))..)))).. ( -11.00, z-score =  -0.84, R)
>droEre2.scaffold_4845 6934915 68 + 22589142
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
...((((..(((((..(.(((((((....(((((.....))))).))))))).).)))))..)))).. ( -11.00, z-score =  -0.84, R)
>droAna3.scaffold_13266 14537716 68 - 19884421
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
...((((..(((((..(.(((((((....(((((.....))))).))))))).).)))))..)))).. ( -11.00, z-score =  -0.84, R)
>dp4.chr3 17436557 68 - 19779522
AACAAUUCCCUAUAAAAGACAACAAUGUCUAUGUUUUGUAUAUAUAUGUCGUGUAUAUAGUUGGUUUC
..((((..........(((((....)))))......(((((((((.....)))))))))))))..... ( -10.60, z-score =  -0.89, R)
>droPer1.super_31 579462 68 + 935084
AACAAUUCCCUAUAAAAGACAACAAUGUCUAUGUUUUGUAUAUAUAUGUCGUGUAUAUAGUUGGUUUC
..((((..........(((((....)))))......(((((((((.....)))))))))))))..... ( -10.60, z-score =  -0.89, R)
>consensus
AACAAUUCCCUAUAAAAGACAACAUUGUCUAUGUUUUGUAUAUAUAUGUUGUGUAUAUAGUUGGUUUC
..((((..........(((((....)))))......(((((((((.....)))))))))))))..... (-10.75 = -10.75 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:13 2011