| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,180,136 – 10,180,209 |
| Length | 73 |
| Max. P | 0.733941 |
| Location | 10,180,136 – 10,180,209 |
|---|---|
| Length | 73 |
| Sequences | 7 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 52.45 |
| Shannon entropy | 0.83231 |
| G+C content | 0.30338 |
| Mean single sequence MFE | -16.35 |
| Consensus MFE | -0.55 |
| Energy contribution | 0.67 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 2.33 |
| Mean z-score | -3.07 |
| Structure conservation index | 0.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10180136 73 - 21146708 UUUUUCAAUGCAAUUUGUAGGGGUUUAUAACAAUAGUUCG--------------AUAUGAACUAUUGUUUUUAGCCCCAAAAUAUUC- ........(((.....)))((((((...(((((((((((.--------------....)))))))))))...)))))).........- ( -24.80, z-score = -6.14, R) >droPer1.super_31 572123 70 + 935084 AUGUGAAUGACGAAACUCAGGAAUCAGAGAUACUCGUACAUA---------CAUACAUAUAAUAAUGCAUAAUACAUAA--------- .((((.(((((((..(((........)))....)))).))).---------))))........................--------- ( -9.20, z-score = -0.69, R) >dp4.chr3 17429382 70 - 19779522 AUGUGAAUGACGAAACUCAGGAAUCAGAGAUACUCGUACAUA---------CAUACAUAUAAUAAUGCAUAAUACAUAA--------- .((((.(((((((..(((........)))....)))).))).---------))))........................--------- ( -9.20, z-score = -0.69, R) >droEre2.scaffold_4845 6927666 86 + 22589142 --UUUUAUCGCGAAUUCCAUGAGCCUUAGGCAAUAGUUCAUAGUAAAAUAUGGUAUAUGAACUAUUGUCUUAAGCCCUAAACAAAUUC --.........(((((....(.((...(((((((((((((((.............)))))))))))))))...)).)......))))) ( -21.12, z-score = -3.54, R) >droYak2.chr2R 10117632 62 - 21139217 --UUUUAUCGCAAUUUCCGUGGGUCUUAGGCA----------------------AUAUGAACUAUUG-UUAAACCCUAAGGAAAAUC- --...........(((((..((((.((((.((----------------------(((.....)))))-))))))))...)))))...- ( -15.10, z-score = -2.48, R) >droSec1.super_1 7687270 72 - 14215200 -UUUUAAACGCAAUUUAUAUGGGUUUUUAACAAUAGUUCG--------------AUAUGAACUAUCGUUUUCAGCCCAAAAAUACUG- -..................((((((...(((.(((((((.--------------....))))))).)))...)))))).........- ( -17.20, z-score = -4.08, R) >droSim1.chr2R 8941702 72 - 19596830 -UUUUAAAUGCAAUUUGUAUGGGUUUCUAACAAUUGUUCA--------------AUAUGAACUAUUGUUUUCAGCCCAAAAAUAUUC- -......((((.....))))(((((...((((((.((((.--------------....)))).))))))...)))))..........- ( -17.80, z-score = -3.86, R) >consensus _UUUUAAUCGCAAUUUCCAUGGGUCUUAGACAAUAGUUCA______________AUAUGAACUAUUGUUUUAAGCCCAAAAAUA_UC_ ......................(((...)))......................................................... ( -0.55 = 0.67 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:12 2011