| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,833,987 – 2,834,079 |
| Length | 92 |
| Max. P | 0.515212 |
| Location | 2,833,987 – 2,834,079 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.66 |
| Shannon entropy | 0.40120 |
| G+C content | 0.46213 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2833987 92 + 23011544 ACUUUGGCUUCGCAACAGCACA----GCACAUAGAU----ACAUACAUAUGUAGUUCAUGUGUGUUCGUUGGCAGGUGAAGUGAAGCAGGUGAGGCGGCG ......(((((((.....(((.----.(((...(((----..(((((((((.....)))))))))..))).....)))..)))......))))))).... ( -27.70, z-score = -0.85, R) >droSec1.super_5 992817 88 + 5866729 ACUUUGGCUUCGCAACAGCACAU-AGAUACAUACAU----GCAUGCAUAUGUAGUUCAUGUGUGUU----GGCAGGUAAAGUGAAGCAGGUGAGGCG--- ......(((((((..((((((((-(...((.(((((----(......))))))))...))))))))----)((............))..))))))).--- ( -28.20, z-score = -1.49, R) >droSim1.chr2L 2794425 92 + 22036055 ACUUUGGCUUCGCAACAGCACAU-AGAUACAUACAUUCAAACAUAUGUAUGUAGUUCAUGUGUGUU----GGCAGGUGAAGUGAAGCAGGUGAGGCG--- ...((.(((((((..((((((((-(..(((((((((........))))))))).....))))))))----)....))))))).))((.......)).--- ( -33.30, z-score = -3.61, R) >droEre2.scaffold_4929 2881388 83 + 26641161 ACUCUGGCUUCGCAACAGCUCAGCCCGUAGAUACUUACGUA------UAUGUAGUUCAUGUUUGUU--------GGCCAACUGAAGCAGGUGAGGCG--- ......(((((((....((((((((..((((((.(((((..------..)))))....))))))..--------)))....)).)))..))))))).--- ( -21.10, z-score = 0.31, R) >droYak2.chr2L 2827146 89 + 22324452 ACUUUGGCUUCGCAACAGCAUAGCACAUAGAUACGUAUGUACGUAUGUAUGUAGUUCAUGUUUGUU--------GGCUAACUGAAGCAGGUGAGGCG--- ......(((((((((((((((((((((((.((((((....)))))).))))).))).))).)))))--------.(((......)))..))))))).--- ( -31.80, z-score = -2.83, R) >consensus ACUUUGGCUUCGCAACAGCACAG_ACAUACAUACAU____ACAUACAUAUGUAGUUCAUGUGUGUU____GGCAGGUGAAGUGAAGCAGGUGAGGCG___ ......(((((((((((.((((.....((((((..............)))))).....)))))))).........((........))..))))))).... (-14.90 = -15.70 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:22 2011