| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,130,617 – 10,130,707 |
| Length | 90 |
| Max. P | 0.869039 |
| Location | 10,130,617 – 10,130,707 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 63.86 |
| Shannon entropy | 0.58286 |
| G+C content | 0.52287 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -14.52 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10130617 90 - 21146708 GAAGCGUGACGUUCUCCUUGGUGGCAGCAGUGCUGCCGCUUUU---------------UGAACUAUU---CCGCAAUUUUCCCUUGUCACGUGAC---UUCUCGUGCACAC ...(((.((.((((.....(((((((((...)))))))))...---------------.))))...)---))))..........(((((((.(..---..).)))).))). ( -30.70, z-score = -3.02, R) >droSec1.super_1 7638238 90 - 14215200 GCAGCGUGACGUUCUCCUUGGUGGCAGCAGUGCUGCCGCUUUU---------------UGAACUAUU---CCGCAGUUUUCCCUUGUCGCGUGAC---UUCUCGUGCACAC ...(((.((.((((.....(((((((((...)))))))))...---------------.))))...)---))))..........(((((((.(..---..).)))).))). ( -30.30, z-score = -1.84, R) >droYak2.chr2R 10067560 90 - 21139217 GCAGCGUGACGUUCCCCUUGGUGGCAGCAGUGCUUCCGCUUUU---------------UGAACUGUU---CCGUAAUUUUCCCUUGUCGCGUGAC---UUCUCGAGCACGC ...(((..((((((.....(((((.(((...))).)))))...---------------.)))).)).---.)))..............(((((.(---((...)))))))) ( -24.90, z-score = -0.59, R) >droAna3.scaffold_13266 14479214 111 - 19884421 GCAGCGUGACGUUCUCUUUGUUGUUGUUAUUGCUGUUGCUACUGCUACUGCCACUACGGGAACUGUUGCCACGCCGCUUGCCCUUGUCGCGCACCUUGUUUUCGUGGACAC (((((((((((..(........).))))).)))))).((....))........(((((..(((.(.(((...((.((........)).))))).)..)))..))))).... ( -27.10, z-score = 0.91, R) >droWil1.scaffold_180697 3450249 84 + 4168966 GCAAUGUGACAUUUUCUUUGUUAUUAUUGUUGGUGGUG---------------------GCGCUAAUG--CUGCGAGAU----UUGUCACGGGAAAUUUUCUCACGGCGUC ((...((((((...((((.((((((((.....))))))---------------------))((.....--..)))))).----.))))))((((.....))))...))... ( -22.90, z-score = -1.50, R) >consensus GCAGCGUGACGUUCUCCUUGGUGGCAGCAGUGCUGCCGCUUUU_______________UGAACUAUU___CCGCAAUUUUCCCUUGUCGCGUGAC___UUCUCGUGCACAC ...((((((((........(((((((((...)))))))))..................((.............)).........))))))))................... (-14.52 = -13.60 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:09 2011