| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,109,236 – 10,109,328 |
| Length | 92 |
| Max. P | 0.846077 |
| Location | 10,109,236 – 10,109,328 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 67.29 |
| Shannon entropy | 0.54819 |
| G+C content | 0.49866 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -16.48 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10109236 92 - 21146708 --------------UGGUGGACGACUCUGACUGGUC--GACAGCUCGACAGCUGUGGGUUAUGCCAUUAACACUUG---GCUUGCGGCUUGUUUUGUUUGUUUUUUGCCGG --------------.((..((.(((...(((..(((--((....)))))(((((..(((((.............))---)))..)))))......))).))).))..)).. ( -29.02, z-score = -1.44, R) >droSim1.chr2R 8871933 94 - 19596830 -----------UGGUCUUGGACGA--CCGACUGGUC-GGACAGCUCGACAGCUGUGGGUUAUGCCAUUAACACUUG---GCUUGCGGCUUGUUUUGUUUGUUUUUUACCGG -----------.((((......))--))..(((((.-(((((((..((((((((..(((((.............))---)))..)))).))))..).))))))...))))) ( -30.32, z-score = -1.73, R) >droSec1.super_1 7616880 94 - 14215200 -----------UGGUCUUGGACGA--CCGACUGGUC-GGACAGCUCGACAGCUGUGGGUUAUGCCAUUAACACUUG---GCUUGCGGCUUGUUUUGUUUGUUUUUUACCGG -----------.((((......))--))..(((((.-(((((((..((((((((..(((((.............))---)))..)))).))))..).))))))...))))) ( -30.32, z-score = -1.73, R) >droYak2.chr2R 10046218 87 - 21139217 ------------------GGACUG-GUGGACUGGUG--GACAGCUCGACAGCUGUGGGAUAUGCCAUUAACACUUG---GCUUGCGGCUUGCUUUGUUUGUUUUUUGCCGG ------------------...(((-(..((..((..--(((((..((..(((((..(.....((((........))---)))..)))))))..)))))..)).))..)))) ( -27.60, z-score = -1.23, R) >droAna3.scaffold_13266 14068594 111 + 19884421 CAGGUUAUCUUGGCUUUAUCAUAAUUGACACUAGUCUUGGCACAUUUUUCUCCCAAAAACCGAACACCUGCCCUUGGGAGUGUUGGGUUGUUUUUGUUUGCUUUUUGCCGG ...........((((...(((....)))....)))).(((((...............((((.(((((...((....)).))))).))))((........))....))))). ( -23.40, z-score = 0.65, R) >consensus ____________G_UCUUGGACGA__CCGACUGGUC__GACAGCUCGACAGCUGUGGGUUAUGCCAUUAACACUUG___GCUUGCGGCUUGUUUUGUUUGUUUUUUGCCGG ..............................(((((...((((((..(((((((((((((.....((........))...))))))))).))))..).)))))....))))) (-16.48 = -16.52 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:08 2011