| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,109,103 – 10,109,196 |
| Length | 93 |
| Max. P | 0.564627 |
| Location | 10,109,103 – 10,109,196 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 69.85 |
| Shannon entropy | 0.51811 |
| G+C content | 0.52957 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -13.64 |
| Energy contribution | -14.32 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10109103 93 + 21146708 --------AUAAUUCCGUUUUGGAC-ACGCCUUUCGCCAAUCGACG---GGUGACUCACUGAGCGAUUUUUUGGCAUUUGCCCAAGGCUCGGUUUUUUGGGUAGC --------.....(((.....))).-.(((((.(((.....))).)---))))(((((..((.(((.((((.(((....))).)))).))).))...)))))... ( -25.00, z-score = -0.35, R) >droSim1.chr2R 8871793 100 + 19596830 ACAUCCGAUCCGAUUCGAUUUGGAC-ACGCCUUUCGCCAAUCGACG---GGUGACUCACUGAGCGAUUUUUUGGCAUUUGCCCAAGGCUCG-CUUUUUGGGUAGC .((((((...((((((((...((..-...))..)))..))))).))---))))(((((..((((((.((((.(((....))).)))).)))-)))..)))))... ( -35.90, z-score = -3.00, R) >droSec1.super_1 7616740 100 + 14215200 ACAUCCGAUCCGAUUCGCAUUGGAC-ACGCCUUUCGCCAAUCGACG---GGUGACUCACUGAGCGAAUUUUUGGCAUUUGCCCAAGGCUCG-CUUUUUGGGUAGC .((((((...(((((.(((..((..-...))..).)).))))).))---))))(((((..((((((.((((.(((....))).)))).)))-)))..)))))... ( -36.50, z-score = -2.90, R) >droYak2.chr2R 10046080 98 + 21139217 ----CAAGCUAAUCCCAACGGAUAC-ACGCCUUUCGCCAAUCGAUGACUGGUGAGUCACUGAGCGAAUUUUUGGCAUUUGCCCAAGGCUCG--CUUUUGGGUAGC ----...((((..((((((((..((-.((((..(((.(....).)))..)))).))..)))(((((.((((.(((....))).)))).)))--)).))))))))) ( -30.70, z-score = -1.55, R) >dp4.chr3 17358791 86 + 19779522 ------AGUUGAUCUCGGCGGGGCCUGUCCCUCCCGUGAGUCAGCG-------AUCCAAU---CCAGUUUUUGGCAUUCGCCCAAGGUUC---UCUUCGCGUGGC ------.(((((((.(((.((((.....)))).))).)).)))))(-------(.((((.---.......))))...))((((..((...---...))..).))) ( -24.30, z-score = 0.47, R) >consensus ____C_AAUUAAUUUCGACUUGGAC_ACGCCUUUCGCCAAUCGACG___GGUGACUCACUGAGCGAAUUUUUGGCAUUUGCCCAAGGCUCG__UUUUUGGGUAGC ...................................(((((....((...((((...))))...)).....)))))..((((((((((.......)))))))))). (-13.64 = -14.32 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:22:07 2011