| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,804,617 – 2,804,713 |
| Length | 96 |
| Max. P | 0.839465 |
| Location | 2,804,617 – 2,804,713 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 74.95 |
| Shannon entropy | 0.46450 |
| G+C content | 0.50988 |
| Mean single sequence MFE | -23.75 |
| Consensus MFE | -15.13 |
| Energy contribution | -16.98 |
| Covariance contribution | 1.85 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2804617 96 - 23011544 GCAGUCCAGUCCAGCGGAUUGCCUUUGACUUUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGC-CAAAGCGAUACCAUCGCUUUC (((((((........))))))).............(((.((((((..(((((....))))))))))).)))....-.((((((((...)))))))). ( -30.80, z-score = -2.89, R) >droSim1.chr2L 2762545 90 - 22036055 GCAGUCCAGUCCAGCGGAUUGC------CUUUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGUUUCUCACAGC-CAACGCGAUACCAUUGCUUUC (((((((........)))))))------......(((..((..(((((((((....))))).)))).))..))).-....(((((...))))).... ( -22.70, z-score = -1.33, R) >droSec1.super_5 963712 90 - 5866729 GCAGUCCAGUCCGGCGGAUUGC------CUUUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGC-CAACGCGAUACCAUUGCUUUC (((((((........)))))))------.......(((.((((((..(((((....))))))))))).)))....-....(((((...))))).... ( -26.40, z-score = -1.34, R) >droYak2.chr2L 2796912 90 - 22324452 GCAGUCGAGUCCAGCGGAUUGC------CUUCGCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGC-CAACGCGAUACCAUCGCUUUC ((((((..(.....).))))))------....((.(((.((((((..(((((....))))))))))).)))..))-....(((((...))))).... ( -26.50, z-score = -0.91, R) >droEre2.scaffold_4929 2851189 90 - 26641161 GCAGUCCAGUCCAGCGGAUUGC------CUUUGCCAGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGC-CAACGCGAUACCAUCGCUUUC (((((((........)))))))------........((.((((((..(((((....))))))))))).)).....-....(((((...))))).... ( -28.20, z-score = -2.06, R) >droGri2.scaffold_15126 5058412 78 + 8399593 -----ACCGUUCAG-------------ACUCUUAUUGA-AACAUAAAUAUUUUGAAAGCGCCUCGCCUCCACUCUGUGAAGCAGUUCUUUAAUUUUA -----....(((((-------------(....((((..-......)))).))))))...((.((((.........)))).))............... ( -7.90, z-score = 0.53, R) >consensus GCAGUCCAGUCCAGCGGAUUGC______CUUUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGC_CAACGCGAUACCAUCGCUUUC (((((((........)))))))..............((.((((((..(((((....))))))))))).))..........((((.....)))).... (-15.13 = -16.98 + 1.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:22 2011