| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,022,869 – 10,022,925 |
| Length | 56 |
| Max. P | 0.946677 |
| Location | 10,022,869 – 10,022,925 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 96.43 |
| Shannon entropy | 0.06046 |
| G+C content | 0.45357 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.54 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10022869 56 + 21146708 UAGGACAUGUGUCCUUAGCAUCGUAUCUAUAAUAUGUGGGGCACAUUUAGUGCUCG .(((((....)))))...((.(((((.....)))))))((((((.....)))))). ( -16.70, z-score = -2.24, R) >droEre2.scaffold_4845 6773809 56 - 22589142 UAGGACAUGUGUCCCUUGCAUCGUAUCUAUAAUAUGUGGGGCACAUUUAGUGCCCG ..((((....))))....((.(((((.....)))))))((((((.....)))))). ( -18.80, z-score = -2.31, R) >droYak2.chr2R 9958976 56 + 21139217 UAGGACAUGUGUCCCUUGCAUCGCAUCUAUAAUAUGUGGGGCACAUUUAGUGCCCG ..((((....)))).......(((((.......)))))((((((.....)))))). ( -19.60, z-score = -2.42, R) >droSec1.super_1 7530806 56 + 14215200 UAGGACAUGUGUCCCUAGCAUCGUAUCUAUAAUAUGUGGGGCACAUUUAGUGCUCG .((.(((((((((((......(((((.....))))).)))))))))...)).)).. ( -16.00, z-score = -1.56, R) >droSim1.chr2R 8789108 56 + 19596830 UAGGACAUGUGUCCCUAGCAUCGUAUCUAUAAUAUGUGGGGCACAUUUAGUGCUCG .((.(((((((((((......(((((.....))))).)))))))))...)).)).. ( -16.00, z-score = -1.56, R) >consensus UAGGACAUGUGUCCCUAGCAUCGUAUCUAUAAUAUGUGGGGCACAUUUAGUGCUCG ..((((....))))....((.(((((.....)))))))((((((.....)))))). (-16.58 = -16.54 + -0.04)
| Location | 10,022,869 – 10,022,925 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 96.43 |
| Shannon entropy | 0.06046 |
| G+C content | 0.45357 |
| Mean single sequence MFE | -14.98 |
| Consensus MFE | -11.88 |
| Energy contribution | -11.72 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10022869 56 - 21146708 CGAGCACUAAAUGUGCCCCACAUAUUAUAGAUACGAUGCUAAGGACACAUGUCCUA ..(((((((((((((.....)))))).)))......)))).(((((....))))). ( -12.50, z-score = -2.33, R) >droEre2.scaffold_4845 6773809 56 + 22589142 CGGGCACUAAAUGUGCCCCACAUAUUAUAGAUACGAUGCAAGGGACACAUGUCCUA .((((((.....)))))).......................(((((....))))). ( -18.50, z-score = -3.02, R) >droYak2.chr2R 9958976 56 - 21139217 CGGGCACUAAAUGUGCCCCACAUAUUAUAGAUGCGAUGCAAGGGACACAUGUCCUA .((((((.....)))))).............(((...))).(((((....))))). ( -18.90, z-score = -2.56, R) >droSec1.super_1 7530806 56 - 14215200 CGAGCACUAAAUGUGCCCCACAUAUUAUAGAUACGAUGCUAGGGACACAUGUCCUA ..(((((((((((((.....)))))).)))......)))).(((((....))))). ( -12.50, z-score = -1.50, R) >droSim1.chr2R 8789108 56 - 19596830 CGAGCACUAAAUGUGCCCCACAUAUUAUAGAUACGAUGCUAGGGACACAUGUCCUA ..(((((((((((((.....)))))).)))......)))).(((((....))))). ( -12.50, z-score = -1.50, R) >consensus CGAGCACUAAAUGUGCCCCACAUAUUAUAGAUACGAUGCUAGGGACACAUGUCCUA ...((((.....)))).........................(((((....))))). (-11.88 = -11.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:55 2011