| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,008,285 – 10,008,386 |
| Length | 101 |
| Max. P | 0.639189 |
| Location | 10,008,285 – 10,008,386 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 92.25 |
| Shannon entropy | 0.13384 |
| G+C content | 0.42918 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -22.22 |
| Energy contribution | -24.10 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10008285 101 - 21146708 UAAUUAGAAGUGGUUACAUGUGGUCGAUGUGAUCGCAGAAUCAGUUAGUUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA .((((((...(((((...(((((((.....))))))).))))).))))))(((.....)))...((((((.....))))))..((((....))))...... ( -30.50, z-score = -2.18, R) >droEre2.scaffold_4845 6759357 98 + 22589142 UAAUUAGAAGUGGUUACA---AGUCCAUGUGAUCGCAGAAUCAGUUAGCUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGCGAACUGACAACAGUCAAUCA .........(((((((((---......))))))))).......((((((((......(((((.....))))).))))))))((..((((....)))).)). ( -27.40, z-score = -1.50, R) >droYak2.chr2R 9940997 98 - 21139217 UAAUUAGAAGUGGCUACA---AUUCCAUGUGAUCGCAGAAUCAGUUAGCUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA ......((.(..((((..---((((..(((....)))))))....))))..).)).........((((((.....))))))..((((....))))...... ( -26.60, z-score = -1.36, R) >droSec1.super_1 7516203 96 - 14215200 UAAUUAGAAGUGGUUACAUGUGGUCCAUG-GAUCGCAGAAUCAGUUAGUUGCGUCGUUUGCUUGUCCAGCAAUCAG----AAAACUGGCAACAGUCAAUCA ......((..(((((...(((((((....-))))))).)))))(((((((...((..(((((.....)))))...)----).))))))).........)). ( -26.80, z-score = -2.11, R) >droSim1.chr2R 8442069 101 - 19596830 UAAUUAGAAGUGGUUACAUGUGGUCCAUGUGAUCGCAGAAUCAGUUAGUUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA ......((.(((((((((((.....))))))))))).......((((((((((.....)))...((((((.....)))))).))))))).........)). ( -33.10, z-score = -3.15, R) >consensus UAAUUAGAAGUGGUUACAUGUGGUCCAUGUGAUCGCAGAAUCAGUUAGUUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA ......((.((((((((((.......)))))))))).......((((((((((.....)))...((((((.....)))))).))))))).........)). (-22.22 = -24.10 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:53 2011