| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,006,691 – 10,006,794 |
| Length | 103 |
| Max. P | 0.852691 |
| Location | 10,006,691 – 10,006,794 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.88 |
| Shannon entropy | 0.37730 |
| G+C content | 0.39278 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -15.82 |
| Energy contribution | -16.54 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10006691 103 + 21146708 CCAACUCAUCUUCGUUACAAGAACUUAUGCUUGUUGAUGCUCUACAAAGGGGUACAAGUGACAUAACCAAUGGUUUGGCUUAAACAGCCUUGCUUUCCUAAAA .............((((((((........))).(((.((((((.....)))))))))))))).........(((..((((.....))))..)))......... ( -18.60, z-score = 0.42, R) >droEre2.scaffold_4845 6757878 96 - 22589142 CCAACUCAUCUUCGUUACAAGAACUUAUUCUUGUUGAUGCUCUAUAAAGGGGUAUGGUUCGCAUAACCAAUGAGUUGGUU-ACAUAGCAUUGCUUGG------ (((((((((..(((..(((((((....))))))))))((((((.....))))))(((((.....))))))))))))))..-.((.(((...))))).------ ( -25.90, z-score = -2.46, R) >droYak2.chr2R 9939424 86 + 21139217 CCAACUCAUCUUCGUUACAAGAACUUAUUCUAGUUGAUGCUCUAUAAAGGGGUAUGAUUGGCAUAACCAAUGAGUUGAAU-ACACAG---------------- .(((((((((((......))))..((((.((((((.(((((((.....))))))))))))).))))....)))))))...-......---------------- ( -20.80, z-score = -2.20, R) >droSec1.super_1 7514653 93 + 14215200 CCAACUCAUCUUCGUUACAAGAACUUAUGCUUGUUGAUUCUCUACAAAGGGGUA---------UUAACAAUGAGUUGGCU-AAACAGCCUUGCUUUCCUAAAA ((((((((((((......))))........(((((((((((((....))))).)---------)))))))))))))))..-...................... ( -21.30, z-score = -2.13, R) >droSim1.chr2R 8440514 102 + 19596830 CCAACUCAUCUUCGUUACAAGAACUUAUGCUUGUUGAUGCUCUACAAAGGGGCAUAGGUGGCAUAACCAACGAGUUGGUU-AAACAGCCUAGCUUUCCUAAAA (((((((.((((......))))..(((((((.....(((((((.....)))))))....))))))).....)))))))..-...................... ( -27.40, z-score = -1.86, R) >consensus CCAACUCAUCUUCGUUACAAGAACUUAUGCUUGUUGAUGCUCUACAAAGGGGUAUAAGUGGCAUAACCAAUGAGUUGGCU_AAACAGCCUUGCUUUCCUAAAA (((((((((..(((..(((((........))))))))((((((.....))))))...............)))))))))......................... (-15.82 = -16.54 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:52 2011