| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,003,266 – 10,003,379 |
| Length | 113 |
| Max. P | 0.855018 |
| Location | 10,003,266 – 10,003,379 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.61 |
| Shannon entropy | 0.27596 |
| G+C content | 0.28668 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -13.04 |
| Energy contribution | -15.32 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10003266 113 - 21146708 AUACAUACUUAACCAUAUUGAGGGAAAUUUGUAAGACUACAAGUUUUUCUUAAACUACUUUACUGCGAUAGUGAUUAUAGUGAUUUAU-AAUUGCU-----AGUUCAUUGAAGUUUUAG .................(((((..(((((((((....)))))))))..)))))...((((((.((...(((..(((((((....))))-)))..))-----)...)).))))))..... ( -29.80, z-score = -4.28, R) >droEre2.scaffold_4845 6754555 103 + 22589142 ----------------AUGAAAUUAAAUUUGUAAGGCUACAAGUUUUUCUUGCACUACUUUACUGCGAUAGUGAUUAUAGUCAUUUAUAAACUAUUUAUAGACUUCAUUGAAGUUUUAG ----------------...........((((((((((((((((.....))))((((((........).)))))....)))))..)))))))........(((((((...)))))))... ( -15.20, z-score = 0.03, R) >droYak2.chr2R 9936042 97 - 21139217 ----------------AUUAUGUGAAAUUGGUAAGGCUACGAGUUUUUCUUACACUACUUUACUGCGAUGGUGAUUAUAGUGACUUUU-AAUUACU-----ACUUCAUUGAAGUUUAAG ----------------.......((((((.(((....))).)))))).((((....((((((.((...(((((((((..........)-)))))))-----)...)).)))))).)))) ( -15.40, z-score = -0.06, R) >droSec1.super_1 7511335 97 - 14215200 ----------------AUUGAGGGAAAUUUGUAAGACUACAAGUUUUUCUUACACUACUUUACUGCGAUCGUGAUUAUAGUGAUUUAU-AAUUGCU-----ACUUCAUUGAAGUUUUAG ----------------..((((..(((((((((....)))))))))..))))....((((((.((.....(..(((((((....))))-)))..).-----....)).))))))..... ( -24.20, z-score = -3.47, R) >droSim1.chr2R 8437223 97 - 19596830 ----------------AUUGAGGGAAAUUUGUAAGACUACAAGUUUUUCUUACACUACUUUAGUGCGAUCGUGAUUAUAGUGAUUUAU-AAUUACU-----ACUUCAUUGAAGUUUUAG ----------------..((((..(((((((((....)))))))))..))))....(((((((((.....((((((((((....))))-)))))).-----....)))))))))..... ( -28.50, z-score = -4.86, R) >consensus ________________AUUGAGGGAAAUUUGUAAGACUACAAGUUUUUCUUACACUACUUUACUGCGAUAGUGAUUAUAGUGAUUUAU_AAUUACU_____ACUUCAUUGAAGUUUUAG ..................(((((((((((((((....)))))))))))))))(((((..(((((.....)))))...)))))...................(((((...)))))..... (-13.04 = -15.32 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:51 2011