| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,997,627 – 9,997,721 |
| Length | 94 |
| Max. P | 0.965695 |
| Location | 9,997,627 – 9,997,721 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 73.09 |
| Shannon entropy | 0.47281 |
| G+C content | 0.41215 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -15.89 |
| Energy contribution | -17.03 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9997627 94 + 21146708 -------------UGGCGUUUGCUAAGAUUUCGUGCCUUUUUAACUUGGCACUUUAAUUGAAAACGAUUUG-CGAUAAUUAAGCAUACGCCACGUGGUCGCUUCAAAG -------------((((((.((((......(((((((..........)))))...(((((....)))))..-.))......)))).))))))................ ( -23.90, z-score = -1.47, R) >droSim1.chr2R 8431483 92 + 19596830 -------------UGGCGUUUGCUAAGAUUUCGUGCCUUU--AACUUGGCGCUUUAAUUGGAAACGAUUUG-CGAUAAUUAAGCAUACGCCACGUGGUCGCUUCAAAG -------------((((((.((((......(((((((...--.....)))))...(((((....)))))..-.))......)))).))))))................ ( -28.70, z-score = -2.34, R) >droSec1.super_1 7505773 81 + 14215200 -------------UGGCGUUUGCUAAGAUUUCGUGCUUUU--AACUUGGCACUUUAAUUGGAAACGAUUUG-CGAUAAUUAAGCAUACGCCACGUGG----------- -------------((((((.((((......(((((((...--.....)))))...(((((....)))))..-.))......)))).)))))).....----------- ( -26.70, z-score = -3.89, R) >droYak2.chr2R 9930360 92 + 21139217 -------------UGGCGUUUGCUAAGAUUUCGUGCCUUU--AACUUGGCACUUUAAUUGAAAACGAUUUG-CGAUAAUUAAGCAUACGCCACGUGGUCGCUUCAAAG -------------((((((.((((......(((((((...--.....)))))...(((((....)))))..-.))......)))).))))))................ ( -24.80, z-score = -1.80, R) >droEre2.scaffold_4845 6748935 92 - 22589142 -------------UGGCGUUUGCUAAGACUUCGGGCCUUU--AACAUGGCACUUUAAUUGAAAACGAUUUG-CGAUAAUUAAGCAUACGCCACGUGGUCGCUUCAAAG -------------((((((.((((......(((.(((...--.....))).....(((((....)))))..-)))......)))).))))))................ ( -22.60, z-score = -0.95, R) >droGri2.scaffold_15112 1135579 103 - 5172618 AUUACCCACUCUCCUGAGCUGAUAAAAACAACGGACGUCCAAUUCUCGGCGCCU-AAUUAAAAAUAACAAAAUUCUAAUCAAGCAUAUGUCACGUAGAUAGAAG---- ......(((((....))).))...........((.((((........)))))).-..................((((.....((....))....))))......---- ( -10.50, z-score = 0.62, R) >consensus _____________UGGCGUUUGCUAAGAUUUCGUGCCUUU__AACUUGGCACUUUAAUUGAAAACGAUUUG_CGAUAAUUAAGCAUACGCCACGUGGUCGCUUCAAAG .............((((((.((((........(((((..........)))))...(((((....)))))............)))).))))))................ (-15.89 = -17.03 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:49 2011