| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,964,167 – 9,964,269 |
| Length | 102 |
| Max. P | 0.550732 |
| Location | 9,964,167 – 9,964,269 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.93 |
| Shannon entropy | 0.28013 |
| G+C content | 0.36821 |
| Mean single sequence MFE | -14.13 |
| Consensus MFE | -11.67 |
| Energy contribution | -11.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9964167 102 - 21146708 UUUUUUCCUCUUUUAGAACUUUUUUUUUCGUUGUAGAACUGUAGAA--UGUUUUAGUUCACCUUUCGACGCUUGCUGUCAAUGUCCUUUUGUCCCUAGAUAGCU ............................(((((..((((((.....--.....))))))......)))))...((((((...(..(....)..)...)))))). ( -14.30, z-score = -0.34, R) >droEre2.scaffold_4845 6731472 82 + 22589142 -------------------CUUUUUUUUUG-UGUAGAACUGUAGAA--UGUUUUAGUUCACCUUUCGACGCUUGCUGUCAAUGUCCUUUUGUCCCUAGAUAGCU -------------------..........(-(((.(((..((.(((--(......))))))..))).))))..((((((...(..(....)..)...)))))). ( -15.20, z-score = -1.62, R) >droYak2.chr2R 9913059 91 - 21139217 -------CUUUUUU----CCCCUUUUUUUGU--UAGAACUGCAGAAUUUUUUUUAGUUCACCUUUCGACGCUUGCUGUCAAUGUCCUUUUGUCCCUAGAUAGCA -------.......----.............--..((((((.(((....))).)))))).............(((((((...(..(....)..)...))))))) ( -12.90, z-score = -1.41, R) >consensus _______CU_UUUU____CCUUUUUUUUUGUUGUAGAACUGUAGAA__UGUUUUAGUUCACCUUUCGACGCUUGCUGUCAAUGUCCUUUUGUCCCUAGAUAGCU ...................................((((((............))))))..............((((((...(..(....)..)...)))))). (-11.67 = -11.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:46 2011