| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,801,389 – 2,801,493 |
| Length | 104 |
| Max. P | 0.655265 |
| Location | 2,801,389 – 2,801,493 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.43 |
| Shannon entropy | 0.47180 |
| G+C content | 0.50238 |
| Mean single sequence MFE | -34.93 |
| Consensus MFE | -11.76 |
| Energy contribution | -13.59 |
| Covariance contribution | 1.82 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2801389 104 + 23011544 GAUUUGGCCGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACUAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUUUGGUUUGGUUUGGGGCA ......(((..(.(((((((.((....)).))))))).)(((.....)))...((((.(..(((..((((((((.....))))))))..)))..).))))))). ( -34.30, z-score = -2.76, R) >droSim1.chr2L 2758994 104 + 22036055 GAUUUGGCCGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUGUGGUUUGGUUUGGGGCA ......(((.((((((((((.((....)).)))))))...((.....))))).((((.(..(((((.(((((((.....))))))).)))))..).))))))). ( -31.60, z-score = -0.91, R) >droSec1.super_5 960602 104 + 5866729 GAUUUGGCCGUGGGGCAAUUGCAUUAUUGGGGUUGCUGCGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUGUGGUUUGGUUUGGGGCA ......((((((.(((((((.((....)).))))))).)).).......((((.....(..(((((.(((((((.....))))))).)))))..).))))))). ( -33.50, z-score = -1.33, R) >droYak2.chr2L 2793578 99 + 22324452 GAUUUGGCCGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGACAGCAAUCGAUUUGAAUUGGGGCAAUUGUGAUGAUUGCU-----UCGCUUUGGGGCA ......(((.(..(((..............(((((((((.......)))))))))..........(((((((((.....)))))))-----)))))..).))). ( -35.80, z-score = -2.77, R) >droEre2.scaffold_4929 2847879 99 + 26641161 GAUUUGGCCGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUCUGAAUUGGGGCAAUUGGGAUGAUUGGU-----UCGGCUUGUGGCA ......((((..((((((((.((....)).)))))).......(((((.((((((.((((.(((((...))))).)))))))))))-----))))))..)))). ( -38.70, z-score = -3.42, R) >dp4.chr4_group4 2142878 92 - 6586962 -------CAGCCGGGCGAUUGCA--AUUGGGGG-GCUGUGUCAUCGGACAUAAUCCGGAUAGAUUCCGG-AUUUGGGAAGGC-GCAGAGCUUUCCUAAAGAGAA -------(((((...((((....--))))...)-))))((((....))))...((((((.....)))))-)(((((((((((-.....)))))))))))..... ( -35.30, z-score = -2.67, R) >droPer1.super_93 110854 92 - 177177 -------CAGCCGGGCGAUUGCA--AUUGGGGG-GCUGUGUCAUCGGACAUAAUCCGGAUAGAUUCCGG-AUUUGGGAAGGC-GCAGAGCUUUCCUAAAGAGAA -------(((((...((((....--))))...)-))))((((....))))...((((((.....)))))-)(((((((((((-.....)))))))))))..... ( -35.30, z-score = -2.67, R) >consensus GAUUUGGCCGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGGAUGAUUGCUGUGGUUUGGUUUGGGGCA ......((((((.(((((((.((....)).))))))).)).).((((......))))...........((((((.....))))))...............))). (-11.76 = -13.59 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:20 2011