| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,950,340 – 9,950,397 |
| Length | 57 |
| Max. P | 0.925353 |
| Location | 9,950,340 – 9,950,397 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 92.46 |
| Shannon entropy | 0.13548 |
| G+C content | 0.63860 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -21.26 |
| Energy contribution | -21.38 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.925353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9950340 57 + 21146708 UGAGGGGUGAUGUGACUGCUGGCGCUGAAGCGUGAGCUGUGACGGCUCUCCAUCGCU .((((((.(.(((.((.(((.((((....)))).))).)).))).).)))).))... ( -24.60, z-score = -2.56, R) >droSim1.chr2R 8387529 57 + 19596830 UGACGGGUGAUGGGACUGCUGGCGCUGAAGUGUGAGCUGUGACGGCUCUCCAUCGCU .....(((((((((.......((((....))))((((((...))))))))))))))) ( -22.10, z-score = -1.95, R) >droSec1.super_1 7474796 57 + 14215200 UGACGGGUGAUGGGCCUGCUGGCGCUGAAGAGUGAGCUGUGACGGCUCUCCAUCGCU .....(((((((((((....)))..........((((((...)))))).)))))))) ( -23.30, z-score = -1.72, R) >droYak2.chr2R 9899110 57 + 21139217 UGUCGGGUGAUGGGGCUGCUGACGCUGGAGCGUGAGCUGUGACGGCUCUCCAUCGCU .....((((((((((..((((.(((...(((....)))))).)))).)))))))))) ( -28.30, z-score = -3.01, R) >droEre2.scaffold_4845 6717886 57 - 22589142 UGUCGGGUGAUGGGGCUGCUGGCGCUGGAGCGUGAGCUGGGACGGCUCUCCAUCGCU .....((((((((((..((((...((.(.((....))).)).)))).)))))))))) ( -27.10, z-score = -1.97, R) >consensus UGACGGGUGAUGGGACUGCUGGCGCUGAAGCGUGAGCUGUGACGGCUCUCCAUCGCU .....(((((((((.......((((....))))((((((...))))))))))))))) (-21.26 = -21.38 + 0.12)
| Location | 9,950,340 – 9,950,397 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 92.46 |
| Shannon entropy | 0.13548 |
| G+C content | 0.63860 |
| Mean single sequence MFE | -15.58 |
| Consensus MFE | -13.38 |
| Energy contribution | -12.98 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.521953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9950340 57 - 21146708 AGCGAUGGAGAGCCGUCACAGCUCACGCUUCAGCGCCAGCAGUCACAUCACCCCUCA .(.(((((....))))).).(((..(((....)))..)))................. ( -13.90, z-score = -0.84, R) >droSim1.chr2R 8387529 57 - 19596830 AGCGAUGGAGAGCCGUCACAGCUCACACUUCAGCGCCAGCAGUCCCAUCACCCGUCA ...(((((.((((.......))))........((....))....)))))........ ( -14.50, z-score = -1.62, R) >droSec1.super_1 7474796 57 - 14215200 AGCGAUGGAGAGCCGUCACAGCUCACUCUUCAGCGCCAGCAGGCCCAUCACCCGUCA ...(((((.((((.......))))..........(((....))))))))........ ( -16.30, z-score = -1.15, R) >droYak2.chr2R 9899110 57 - 21139217 AGCGAUGGAGAGCCGUCACAGCUCACGCUCCAGCGUCAGCAGCCCCAUCACCCGACA .(((((((....)))))...(((.((((....)))).))).)).............. ( -17.70, z-score = -2.22, R) >droEre2.scaffold_4845 6717886 57 + 22589142 AGCGAUGGAGAGCCGUCCCAGCUCACGCUCCAGCGCCAGCAGCCCCAUCACCCGACA ...(((((.((((.......))))..(((...((....))))).)))))........ ( -15.50, z-score = -1.43, R) >consensus AGCGAUGGAGAGCCGUCACAGCUCACGCUUCAGCGCCAGCAGCCCCAUCACCCGUCA ...(((((.((((.......))))..(((...((....))))).)))))........ (-13.38 = -12.98 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:45 2011