Locus 4046

Sequence ID	dm3.chr2R
Location	9,915,726 – 9,915,816
Length	90
Max. P	0.551566

overview

Window 1

Location	9,915,726 – 9,915,816
Length	90
Sequences	7
Columns	90
Reading direction	forward
Mean pairwise identity	82.06
Shannon entropy	0.33131
G+C content	0.48791
Mean single sequence MFE	-25.03
Consensus MFE	-18.35
Energy contribution	-18.46
Covariance contribution	0.11
Combinations/Pair	1.22
Mean z-score	-1.30
Structure conservation index	0.73
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.12
SVM RNA-class probability	0.551566
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 9915726 90 + 21146708
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACUUGGCGUCGCAUGUGAAUGUGUGCGUGUGUGCGAAUGAGUGUGGC
...(((..(((((...((((....))))..)))))..)))...((((..((((((((((........))))))).)))...))))..... ( -28.20, z-score =  -1.48, R)
>droSim1.chr2R 8353731 90 + 19596830
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACUUGGCGUCGCAUGUGAAUGUGUGCGUGUGUGCGAAUGAGUGUGGC
...(((..(((((...((((....))))..)))))..)))...((((..((((((((((........))))))).)))...))))..... ( -28.20, z-score =  -1.48, R)
>droYak2.chr2R 14101914 88 - 21139217
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACUUGGCGUCGCAUGUGGAUGUGUGCGUGUGUG--AAUGAGUGUGGC
...(((..(((((...((((....))))..)))))..)))...(((((...(((((..((.(....).))..))))--).)))))..... ( -26.80, z-score =  -1.48, R)
>droEre2.scaffold_4845 6683834 88 - 22589142
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACUUGGCGUCGCAUGUGGAUGUGUGCGUGUGUG--AAUGAGUGUGGC
...(((..(((((...((((....))))..)))))..)))...(((((...(((((..((.(....).))..))))--).)))))..... ( -26.80, z-score =  -1.48, R)
>droAna3.scaffold_13266 13899210 72 - 19884421
AACUUCUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACGUAUCGUAGGGGGAGUGUGAGUGUGGC------------------
.((((((((((((...((((....))))..))))))..((((....)))).....))))))...........------------------ ( -19.00, z-score =  -0.82, R)
>dp4.chr3 8559056 70 - 19779522
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAAC-UGU-GCAGAGUGUGUGUGUGUGUGGC------------------
...(((..(((((...((((....))))..)))))..)))....(-((.-.((.(.......).))..))).------------------ ( -18.00, z-score =  -0.85, R)
>droSec1.super_1 7440424 90 + 14215200
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACUUGGCGUCGCAUGUGAAUGUGUGCGUGUGUGCGAAUGAGUGUGGC
...(((..(((((...((((....))))..)))))..)))...((((..((((((((((........))))))).)))...))))..... ( -28.20, z-score =  -1.48, R)
>consensus
AACUUUUGUGGCAUUGCCAGUUGAUUGGAUUGCCAUGAGAUGAACUUGGCGUCGCAUGUGAAUGUGUGCGUGUGUG__AAUGAGUGUGGC
...((((((((((...((((....))))..))))))))))........(((((((((....))))).))))................... (-18.35 = -18.46 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:40 2011